RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PYM1Q9BRP8 204 aaKnown RBP6.76□□□□□ -1.33
USP40-202ENST00000409945 TMEM175Q9BSA9 504 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 APOL6Q9BWW8 343 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 TLE6Q9H808 572 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 MINDY3Q9H8M7 445 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 FSCN3Q9NQT6 498 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 ZMYM2Q9UBW7 1377 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 VPS51Q9UID3 782 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 MTMR6Q9Y217 621 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 TCAF1Q9Y4C2 921 aa6.76□□□□□ -1.33
USP40-202ENST00000409945 SRPRBQ9Y5M8 271 aaKnown RBP6.76□□□□□ -1.33
USP40-202ENST00000409945 COL4A4P53420 1690 aaPredicted RBP6.75□□□□□ -1.33
USP40-202ENST00000409945 COL6A3P12111 3177 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 A0A1B0GUA9 196 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 GOLGA6L3A6NEY3 463 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 DIRC3C9JPN6 131 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 K7ESM1 405 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 CCP110O43303 1012 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 SKAP2O75563 359 aaPredicted RBP6.75□□□□□ -1.33
USP40-202ENST00000409945 ARF4P18085 180 aaPredicted RBP6.75□□□□□ -1.33
USP40-202ENST00000409945 MARCKSP29966 332 aaPredicted RBP6.75□□□□□ -1.33
USP40-202ENST00000409945 HOXA11P31270 313 aaPredicted RBP6.75□□□□□ -1.33
USP40-202ENST00000409945 SERPINF1P36955 418 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 STAT6P42226 847 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 GATMP50440 423 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 VAV2P52735 878 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 RPS7P62081 194 aaKnown RBP6.75□□□□□ -1.33
USP40-202ENST00000409945 SMC1AQ14683 1233 aaKnown RBP6.75□□□□□ -1.33
USP40-202ENST00000409945 SLC39A14Q15043 492 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 KYAT1Q16773 422 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 ATF7IP2Q5U623 682 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 CLEC17AQ6ZS10 378 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 MICALCLQ6ZW33 695 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 GPBP1Q86WP2 473 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 SDR16C5Q8N3Y7 309 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 SPPL3Q8TCT6 385 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 KCNG4Q8TDN1 519 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 ATG4AQ8WYN0 398 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 PABPC5Q96DU9 382 aaKnown RBP6.75□□□□□ -1.33
USP40-202ENST00000409945 CCDC34Q96HJ3 373 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 ASB2Q96Q27 587 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 PLIN2Q99541 437 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 CCDC94Q9BW85 323 aaPredicted RBP6.75□□□□□ -1.33
USP40-202ENST00000409945 CCSER1Q9C0I3 900 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 MYLK2Q9H1R3 596 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 FZD8Q9H461 694 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 ZHX3Q9H4I2 956 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 UBE2ZQ9H832 354 aaPredicted RBP6.75□□□□□ -1.33
USP40-202ENST00000409945 GOLGA2P5Q9HBQ8 144 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 TBC1D13Q9NVG8 400 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 LPAR3Q9UBY5 353 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 CLIC4Q9Y696 253 aa6.75□□□□□ -1.33
USP40-202ENST00000409945 PRRC2BQ5JSZ5 2229 aaKnown RBP6.75□□□□□ -1.33
USP40-202ENST00000409945 CHD7Q9P2D1 2997 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 SPTLC2O15270 562 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 PPP6R2O75170 966 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 RECQL4O94761 1208 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 CSPG5O95196 566 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 YEATS4O95619 227 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 DDX6P26196 483 aaKnown RBP eCLIP6.74□□□□□ -1.33
USP40-202ENST00000409945 CD6P30203 668 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 GRK6P43250 576 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 GRIK3Q13003 919 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 IL17AQ16552 155 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 TIGD6Q17RP2 521 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 TMEM119Q4V9L6 283 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 TCEAL5Q5H9L2 206 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 CLLU1OSQ5K130 101 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 STXBP4Q6ZWJ1 553 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 C1orf186Q6ZWK4 172 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 MAVSQ7Z434 540 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 GPR149Q86SP6 731 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 METTL25Q8N6Q8 603 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 MYCBPAPQ8TBZ2 947 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 ASB10Q8WXI3 467 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 RAD54LQ92698 747 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 SNX27Q96L92 541 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 MLST8Q9BVC4 326 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 KRTAP9-2Q9BYQ4 174 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 TRIM5Q9C035 493 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 AMBRA1Q9C0C7 1298 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 CWH43Q9H720 699 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 PARVGQ9HBI0 331 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 NECTIN3Q9NQS3 549 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 SLC2A4RGQ9NR83 387 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 DGKBQ9Y6T7 804 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 FNDC1Q4ZHG4 1894 aaPredicted RBP6.74□□□□□ -1.33
USP40-202ENST00000409945 CDH23Q9H251 3354 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 CENPVL1A0A0U1RR11 272 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 ARL5CA6NH57 179 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 RNASET2O00584 256 aaKnown RBP6.74□□□□□ -1.33
USP40-202ENST00000409945 MUSKO15146 869 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 ATF7P17544 494 aaPredicted RBP6.74□□□□□ -1.33
USP40-202ENST00000409945 GAP43P17677 238 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 KCNA5P22460 613 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 MLH1P40692 756 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 OR1G1P47890 313 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 ME1P48163 572 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 SLC12A3P55017 1021 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 KARSQ15046 597 aaKnown RBP6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms