RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 MON1AQ86VX9 555 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 AFAP1L2Q8N4X5 818 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 CCNYL1Q8N7R7 359 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 BEGAINQ9BUH8 593 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 C2orf49Q9BVC5 232 aaPredicted RBP9.73□□□□□ -0.85
COL6A3-204ENST00000392003 FBXO44Q9H4M3 255 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 VTI1BQ9UEU0 232 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 A0A0J9YVX5 310 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 NEMP1O14524 444 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 SH3BP5O60239 455 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 CACNG3O60359 315 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 B3GALNT1O75752 331 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 PIGNO95427 931 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 AHSGP02765 367 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 COX4I1P13073 169 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 ANPEPP15144 967 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 CST5P28325 142 aaPredicted RBP9.73□□□□□ -0.85
COL6A3-204ENST00000392003 GRIA4P48058 902 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 BFSP2Q13515 415 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 CNGA3Q16281 694 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 EPGNQ6UW88 154 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 TMC7Q7Z402 723 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 CCDC117Q8IWD4 279 aaPredicted RBP9.73□□□□□ -0.85
COL6A3-204ENST00000392003 SLC25A41Q8N5S1 370 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 DRC3Q9H069 523 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 ATXN3LQ9H3M9 355 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 SP110Q9HB58 689 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 MAN1C1Q9NR34 630 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 MPP6Q9NZW5 540 aa9.73□□□□□ -0.85
COL6A3-204ENST00000392003 PCNTO95613 3336 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 TK2O00142 265 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 FKTNO75072 461 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 HLA-DQB2P05538 268 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 OR4Q2P0C623 313 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 THRAP10827 490 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 HOXC13P31276 330 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 ATN1P54259 1190 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-204ENST00000392003 TBX4P57082 545 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 KLF10Q13118 480 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 ZNF470Q6ECI4 717 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 LRRC8EQ6NSJ5 796 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 NEPROQ6NW34 567 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 ZCCHC8Q6NZY4 707 aaKnown RBP9.72□□□□□ -0.85
COL6A3-204ENST00000392003 AAGABQ6PD74 315 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 MAVSQ7Z434 540 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 DEFB107AQ8IZN7 70 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 NUP93Q8N1F7 819 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 PANX3Q96QZ0 392 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 SERPINI1Q99574 410 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 PKMYT1Q99640 499 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 VCX3BQ9H321 246 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 MRM3Q9HC36 420 aaKnown RBP9.72□□□□□ -0.85
COL6A3-204ENST00000392003 FNIP2Q9P278 1114 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 FBXO5Q9UKT4 447 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 TMED5Q9Y3A6 229 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 A0A087X1B8 175 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 GOLGA8QA0A0J9YX86 632 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 A0A1W2PQ45 241 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-204ENST00000392003 A0A1W2PQY0 241 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 HEATR9A2RTY3 570 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 GOLGA8OA6NCC3 632 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-204ENST00000392003 GOLGA8NF8WBI6 632 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 CPB1P15086 417 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 GLULP15104 373 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 MPSTP25325 297 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 MLLT6P55198 1093 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-204ENST00000392003 WNT3AP56704 352 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 MPP1Q00013 466 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 OR52E8Q6IFG1 317 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 NAPRTQ6XQN6 538 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 SETD3Q86TU7 594 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-204ENST00000392003 DENND6AQ8IWF6 608 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 ATP6V0D2Q8N8Y2 350 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 ZSCAN18Q8TBC5 510 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-204ENST00000392003 SLC26A7Q8TE54 656 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 JADE3Q92613 823 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 CCDC124Q96CT7 223 aaKnown RBP9.72□□□□□ -0.85
COL6A3-204ENST00000392003 NT5MQ9NPB1 228 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 XPR1Q9UBH6 696 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 DNAJB4Q9UDY4 337 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 CDYLQ9Y232 598 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 HS3ST4Q9Y661 456 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 MRPL42Q9Y6G3 142 aaKnown RBP9.72□□□□□ -0.85
COL6A3-204ENST00000392003 SCN10AQ9Y5Y9 1956 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 PQBP1O60828 265 aaKnown RBP9.72□□□□□ -0.85
COL6A3-204ENST00000392003 ITGB1P05556 798 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 MTTPP55157 894 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 SLC9B1Q4ZJI4 515 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 MAP3K21Q5TCX8 1036 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 MARC1Q5VT66 337 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 KIAA0930Q6ICG6 404 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-204ENST00000392003 IRGCQ6NXR0 463 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 KLC3Q6P597 504 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 SCD5Q86SK9 330 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 ZNF554Q86TJ5 538 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 ZNF280BQ86YH2 543 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 FSTL5Q8N475 847 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-204ENST00000392003 ACVR1CQ8NER5 493 aa9.72□□□□□ -0.85
COL6A3-204ENST00000392003 OR6Y1Q8NGX8 325 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms