RNA–Protein interactions for RNA: ENST00000375661.5

LSM2-208, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM2, Length 876 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-208ENST00000375661 MAN1A1P33908 653 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 ARHGAP25P42331 645 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 NOP2P46087 812 aaKnown RBP12.35□□□□□ -0.43
LSM2-208ENST00000375661 CLCN6P51797 869 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 AIF1P55008 147 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 CDH4P55283 916 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 TAS2R40P59535 323 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 SKOR1P84550 965 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 NRG1Q02297 640 aaPredicted RBP12.35□□□□□ -0.43
LSM2-208ENST00000375661 SLC25A11Q02978 314 aaKnown RBP12.35□□□□□ -0.43
LSM2-208ENST00000375661 CA9Q16790 459 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 ISXQ2M1V0 245 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 FAM72AQ5TYM5 149 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 TXNRD3NBQ6F5E7 133 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 FAM72DQ6L9T8 149 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 ZCCHC8Q6NZY4 707 aaKnown RBP12.35□□□□□ -0.43
LSM2-208ENST00000375661 KYAT3Q6YP21 454 aaKnown RBP12.35□□□□□ -0.43
LSM2-208ENST00000375661 GCNT7Q6ZNI0 430 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 KIAA1328Q86T90 577 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 FAM72BQ86X60 149 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 PYROXD2Q8N2H3 581 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 IFI44Q8TCB0 444 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 MED8Q96G25 268 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 PPP1R16AQ96I34 528 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 MYOCQ99972 504 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 NCAPGQ9BPX3 1015 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 SNRNP25Q9BV90 132 aaKnown RBP12.35□□□□□ -0.43
LSM2-208ENST00000375661 C2orf49Q9BVC5 232 aaPredicted RBP12.35□□□□□ -0.43
LSM2-208ENST00000375661 HDAC8Q9BY41 377 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 CLMPQ9H6B4 373 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 GPATCH2LQ9NWQ4 482 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 TRIM10Q9UDY6 481 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 LCMT1Q9UIC8 334 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 VANGL2Q9ULK5 521 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 U3KQA8 63 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 MGAQ8IWI9 3026 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 CFAP46Q8IYW2 2715 aa12.35□□□□□ -0.43
LSM2-208ENST00000375661 IGLV3-10A0A075B6K4 115 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 TMEM110-MUSTN1A8MSY1 372 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 K7ENP7 123 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 KPNA3O00505 521 aaPredicted RBP12.34□□□□□ -0.43
LSM2-208ENST00000375661 BUB1O43683 1085 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 BNIP3LO60238 219 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 PRPSAP2O60256 369 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 BUB1BO60566 1050 aaPredicted RBP12.34□□□□□ -0.43
LSM2-208ENST00000375661 TCEA3O75764 348 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 CSF2P04141 144 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 RARAP10276 462 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 TMEM259Q4ZIN3 620 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 ERMARDQ5T6L9 678 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 ACBD5Q5T8D3 534 aaPredicted RBP12.34□□□□□ -0.43
LSM2-208ENST00000375661 MANEALQ5VSG8 457 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 KIAA1161Q6NSJ0 714 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 INO80CQ6PI98 192 aaPredicted RBP12.34□□□□□ -0.43
LSM2-208ENST00000375661 Q6ZSR6 202 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 ERN2Q76MJ5 926 aaKnown RBP12.34□□□□□ -0.43
LSM2-208ENST00000375661 SLC22A18ASQ8N1D0 253 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 OR52K2Q8NGK3 314 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 OR2A12Q8NGT7 310 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 WDR48Q8TAF3 677 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 ARRDC3Q96B67 414 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 SLC46A1Q96NT5 459 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 GOLPH3Q9H4A6 298 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 ZWILCHQ9H900 591 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 OR12D3Q9UGF7 316 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 ZFR2Q9UPR6 939 aaKnown RBP12.34□□□□□ -0.43
LSM2-208ENST00000375661 SATB2Q9UPW6 733 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 NEU3Q9UQ49 428 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 HYOU1Q9Y4L1 999 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 ATMQ13315 3056 aa12.34□□□□□ -0.43
LSM2-208ENST00000375661 TENM4Q6N022 2769 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 SPTY2D1-AS1A0A0U1RR47 76 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 EME2A4GXA9 379 aaPredicted RBP12.33□□□□□ -0.44
LSM2-208ENST00000375661 TPP1O14773 563 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 NRDCO43847 1150 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 SRGAP2O75044 1071 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 CNTN5O94779 1100 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 LRIG2O94898 1065 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 PCDH8O95206 1070 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 NME1P15531 152 aaKnown RBP12.33□□□□□ -0.44
LSM2-208ENST00000375661 L1CAMP32004 1257 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 RABIFP47224 123 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 NUMBP49757 651 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 RPS21P63220 83 aaKnown RBP12.33□□□□□ -0.44
LSM2-208ENST00000375661 KIF5AQ12840 1032 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 LY6DQ14210 128 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 ATP13A4Q4VNC1 1196 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 BOLA3Q53S33 107 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 ALFQ53S48 1182 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 C3orf38Q5JPI3 329 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 EFHC2Q5JST6 749 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 RBM44Q6ZP01 1051 aaKnown RBP12.33□□□□□ -0.44
LSM2-208ENST00000375661 PTAR1Q7Z6K3 402 aaPredicted RBP12.33□□□□□ -0.44
LSM2-208ENST00000375661 SETD3Q86TU7 594 aaPredicted RBP12.33□□□□□ -0.44
LSM2-208ENST00000375661 PARGQ86W56 976 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 DCAF4L2Q8NA75 395 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 ATP11CQ8NB49 1132 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 ZNF548Q8NEK5 533 aaPredicted RBP12.33□□□□□ -0.44
LSM2-208ENST00000375661 KLK6Q92876 244 aa12.33□□□□□ -0.44
LSM2-208ENST00000375661 FEM1CQ96JP0 617 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms