RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 PYGLP06737 847 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 LTA4HP09960 611 aaKnown RBP8.78□□□□□ -1
SNRNP40-202ENST00000373720 IGFBP6P24592 240 aaPredicted RBP8.78□□□□□ -1
SNRNP40-202ENST00000373720 NFKBIAP25963 317 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 NMBRP28336 390 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 NUMBP49757 651 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 SUOXP51687 545 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 ITKQ08881 620 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 DUSP4Q13115 394 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 RCN2Q14257 317 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 GRM3Q14832 879 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 GPNMBQ14956 572 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 TAF1AQ15573 450 aaPredicted RBP8.78□□□□□ -1
SNRNP40-202ENST00000373720 SPATS1Q496A3 300 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 LYPLAL1Q5VWZ2 237 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 ZDHHC20Q5W0Z9 365 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 SEL1L3Q68CR1 1132 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 UGT3A1Q6NUS8 523 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 AAGABQ6PD74 315 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 TTC23LQ6PF05 361 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 EPGNQ6UW88 154 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 RNF19BQ6ZMZ0 732 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 CCDC149Q6ZUS6 474 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 NET1Q7Z628 596 aaPredicted RBP8.78□□□□□ -1
SNRNP40-202ENST00000373720 CILP2Q8IUL8 1156 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 APLFQ8IW19 511 aaPredicted RBP8.78□□□□□ -1
SNRNP40-202ENST00000373720 CPXM2Q8N436 756 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 CPSF7Q8N684 471 aaKnown RBP8.78□□□□□ -1
SNRNP40-202ENST00000373720 TEX9Q8N6V9 391 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 LEMD2Q8NC56 503 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 RP9Q8TA86 221 aaKnown RBP8.78□□□□□ -1
SNRNP40-202ENST00000373720 ARRDC2Q8TBH0 407 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 JADE3Q92613 823 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 STMN2Q93045 179 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 ZNF689Q96CS4 500 aaPredicted RBP8.78□□□□□ -1
SNRNP40-202ENST00000373720 PABPC5Q96DU9 382 aaKnown RBP8.78□□□□□ -1
SNRNP40-202ENST00000373720 HMCESQ96FZ2 354 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 UBXN10Q96LJ8 280 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 SERPINI1Q99574 410 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 CINPQ9BW66 212 aaPredicted RBP8.78□□□□□ -1
SNRNP40-202ENST00000373720 CCDC106Q9BWC9 280 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 CEP41Q9BYV8 373 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 CDH19Q9H159 772 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 VCX3BQ9H321 246 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 UGT1A7Q9HAW7 530 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 UGT1A10Q9HAW8 530 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 UGT1A8Q9HAW9 530 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 PDFQ9HBH1 243 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 SPG21Q9NZD8 308 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.78□□□□□ -1
SNRNP40-202ENST00000373720 CACNG4Q9UBN1 327 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 UBA2Q9UBT2 640 aaPredicted RBP8.78□□□□□ -1
SNRNP40-202ENST00000373720 DPP7Q9UHL4 492 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 BAIAP2L1Q9UHR4 511 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 LSM7Q9UK45 103 aaKnown RBP8.78□□□□□ -1
SNRNP40-202ENST00000373720 SLC39A10Q9ULF5 831 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 ARHGAP26Q9UNA1 814 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 VWA7Q9Y334 891 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 PSAT1Q9Y617 370 aa8.78□□□□□ -1
SNRNP40-202ENST00000373720 SYCE1LA8MT33 242 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 H3BMM5 538 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 MATN2O00339 956 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 USP12O75317 370 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 PMPCBO75439 489 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 RPP40O75818 363 aaKnown RBP8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 TM7SF2O76062 418 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 MT-CYBP00156 380 aaPredicted RBP8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 URODP06132 367 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 KRT16P08779 473 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 OR4Q2P0C623 313 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 SLC35E2BP0CK96 405 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 TPBGLP0DKB5 382 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 DDX6P26196 483 aaKnown RBP eCLIP8.77□□□□□ -1.013e-6■□□□□ 10
SNRNP40-202ENST00000373720 TARSP26639 723 aaKnown RBP8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 OR1D2P34982 312 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 TTPAP49638 278 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 COPAP53621 1224 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 AP1S1P61966 158 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 USP46P62068 366 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 CRADDP78560 199 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 SLC10A7Q0GE19 358 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 GRIK2Q13002 908 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 MTM1Q13496 603 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 ITGA9Q13797 1035 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 POU6F1Q14863 301 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 LAPTM4AQ15012 233 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 CNGA3Q16281 694 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 PREPLQ4J6C6 727 aaPredicted RBP8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 RTP2Q5QGT7 225 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 RASIP1Q5U651 963 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 RAP1GAP2Q684P5 730 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 ZNF470Q6ECI4 717 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 RETSATQ6NUM9 610 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 TXNDC11Q6PKC3 985 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 AFTPHQ6ULP2 937 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 RAB44Q7Z6P3 723 aaPredicted RBP8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 ADGRG6Q86SQ4 1221 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 TMEM126BQ8IUX1 230 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 C10orf107Q8IVU9 208 aa8.77□□□□□ -1.01
SNRNP40-202ENST00000373720 FAM217AQ8IXS0 508 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms