RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 AHCYL1O43865 530 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 NBNO60934 754 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 LCA5LO95447 670 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 VAV1P15498 845 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 IL12RB1P42701 662 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 XIAPP98170 497 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 ACOX1Q15067 660 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 PTPN20Q4JDL3 420 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 STRADAQ7RTN6 431 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 CMC1Q7Z7K0 106 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 AMIGO2Q86SJ2 522 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 DSG4Q86SJ6 1040 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 C10orf107Q8IVU9 208 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-203ENST00000372407 ST13P5Q8NFI4 369 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-203ENST00000372407 MAGEC3Q8TD91 643 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 TCF12Q99081 682 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 PSME2Q9UL46 239 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 R3HDM2Q9Y2K5 976 aaKnown RBP11.51□□□□□ -0.57
PTPRF-203ENST00000372407 VWA7Q9Y334 891 aa11.51□□□□□ -0.57
PTPRF-203ENST00000372407 MYPNQ86TC9 1320 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 DDX3YO15523 660 aaKnown RBP11.5□□□□□ -0.57
PTPRF-203ENST00000372407 PDE9AO76083 593 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 HNRNPLP14866 589 aaKnown RBP eCLIP11.5□□□□□ -0.57
PTPRF-203ENST00000372407 NUP62P37198 522 aaPredicted RBP11.5□□□□□ -0.57
PTPRF-203ENST00000372407 MRPS5P82675 430 aaKnown RBP11.5□□□□□ -0.57
PTPRF-203ENST00000372407 USP4Q13107 963 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 SGCGQ13326 291 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 GJC2Q5T442 439 aaPredicted RBP11.5□□□□□ -0.57
PTPRF-203ENST00000372407 C11orf88Q6PI97 169 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 AFTPHQ6ULP2 937 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 GCNT7Q6ZNI0 430 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 GPRIN3Q6ZVF9 776 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 ALYREFQ86V81 257 aaKnown RBP11.5□□□□□ -0.57
PTPRF-203ENST00000372407 C12orf29Q8N999 325 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 FAM13CQ8NE31 585 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 OR52K2Q8NGK3 314 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 UBE2E3Q969T4 207 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 PNPLA3Q9NST1 481 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 TDRKHQ9Y2W6 561 aaKnown RBP11.5□□□□□ -0.57
PTPRF-203ENST00000372407 AK5Q9Y6K8 562 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 TRIM43BA6NCK2 446 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 ANKDD1BA6NHY2 528 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 HECTD3Q5T447 861 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 TRAPPC5Q8IUR0 188 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 PQLC1Q8N2U9 271 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 ZNF483Q8TF39 744 aaPredicted RBP11.5□□□□□ -0.57
PTPRF-203ENST00000372407 WDR60Q8WVS4 1066 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 PURBQ96QR8 312 aaKnown RBP11.5□□□□□ -0.57
PTPRF-203ENST00000372407 TMEM109Q9BVC6 243 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 DHX33Q9H6R0 707 aaKnown RBP11.5□□□□□ -0.57
PTPRF-203ENST00000372407 GMPPBQ9Y5P6 360 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 AP4B1Q9Y6B7 739 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 A8MX80 341 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 FZD9O00144 591 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 GSC2O15499 205 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 WFS1O76024 890 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 TSPAN8P19075 237 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 WNT3AP56704 352 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 CDC42P60953 191 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 COX10Q12887 443 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 PLD1Q13393 1074 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 INSCQ1MX18 579 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 SETMARQ53H47 684 aaPredicted RBP11.5□□□□□ -0.57
PTPRF-203ENST00000372407 KIAA0408Q6ZU52 694 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 C16orf59Q7L2K0 433 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 HDAC10Q969S8 669 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 TRPM3Q9HCF6 1732 aaPredicted RBP11.5□□□□□ -0.57
PTPRF-203ENST00000372407 SGTAO43765 313 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 NOL4O94818 638 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 OTCP00480 354 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 FYNP06241 537 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 SLC7A2P52569 658 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 CDK18Q07002 472 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 RGS21Q2M5E4 152 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 EFCAB3Q8N7B9 438 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 GSTCDQ8NEC7 633 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 NMUR2Q9GZQ4 415 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 CLEC4MQ9H2X3 399 aaPredicted RBP11.5□□□□□ -0.57
PTPRF-203ENST00000372407 ZFP14Q9HCL3 533 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 PNPOQ9NVS9 261 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 ENTPD4Q9Y227 616 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 PLLPQ9Y342 182 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 STRCP1A6NGW2 1772 aa11.5□□□□□ -0.57
PTPRF-203ENST00000372407 KLRG2A4D1S0 409 aaPredicted RBP11.49□□□□□ -0.57
PTPRF-203ENST00000372407 FFAR3O14843 346 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 SNPHO15079 494 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 KPNA5O15131 536 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 GPR42O15529 346 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 LYPLA1O75608 230 aaPredicted RBP11.49□□□□□ -0.57
PTPRF-203ENST00000372407 CCNA2P20248 432 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 LPOP22079 712 aaPredicted RBP11.49□□□□□ -0.57
PTPRF-203ENST00000372407 GRM5P41594 1212 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 CDH13P55290 713 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 UGCGQ16739 394 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 RFX4Q33E94 735 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 PPP1R26Q5T8A7 1209 aaPredicted RBP11.49□□□□□ -0.57
PTPRF-203ENST00000372407 ZNF549Q6P9A3 640 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 APTXQ7Z2E3 356 aaKnown RBP11.49□□□□□ -0.57
PTPRF-203ENST00000372407 GPR180Q86V85 440 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms