RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 OR2T3Q8NH03 318 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 MCOLN3Q8TDD5 553 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 ROBO3Q96MS0 1386 aa19.66■□□□□ 0.74
CCDC88B-202ENST00000356786 A0A0J9YYE9 177 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 MLYCDO95822 493 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 NOMO1Q15155 1222 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 PYDC2Q56P42 97 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 ANO7Q6IWH7 933 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 ZNF549Q6P9A3 640 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 IKBIPQ70UQ0 350 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 IZUMO1Q8IYV9 350 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 NKAPQ8N5F7 415 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 TUBGCP5Q96RT8 1024 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 TDRKHQ9Y2W6 561 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 COQ6Q9Y2Z9 468 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 FFAR3O14843 346 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 GPR42O15529 346 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 IDO1P14902 403 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 NFE2Q16621 373 aaPredicted RBP19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 ZNF467Q7Z7K2 595 aaPredicted RBP19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 CAMKK1Q8N5S9 505 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 RTL3Q8N8U3 475 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 MRPL48Q96GC5 212 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 SSU72Q9NP77 194 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 SF3B1O75533 1304 aaKnown RBP eCLIP19.65■□□□□ 0.745e-8■■■■■ 63.3
CCDC88B-202ENST00000356786 CYP2A7P20853 494 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 PIK3CGP48736 1102 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 FSCN1Q16658 493 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 STXBP5Q5T5C0 1151 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 ZDHHC24Q6UX98 284 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 ATP13A1Q9HD20 1204 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 ARL15Q9NXU5 204 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 FAM53CQ9NYF3 392 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 EFR3BQ9Y2G0 817 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 NRXN3Q9Y4C0 1643 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 LOC110117498-PIK3R3F6TDL0 507 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 SNAPC2Q13487 334 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 SLC9A5Q14940 896 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 RNASEH2BQ5TBB1 312 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 CUZD1Q86UP6 607 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 C12orf50Q8NA57 414 aaPredicted RBP19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 ZNF671Q8TAW3 534 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 TOR4AQ9NXH8 423 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 LNPEPQ9UIQ6 1025 aa19.65■□□□□ 0.74
CCDC88B-202ENST00000356786 WARSP23381 471 aaKnown RBP19.64■□□□□ 0.74
CCDC88B-202ENST00000356786 ACTR3P61158 418 aa19.64■□□□□ 0.74
CCDC88B-202ENST00000356786 RPL38P63173 70 aaKnown RBP19.64■□□□□ 0.74
CCDC88B-202ENST00000356786 ZFP69Q49AA0 526 aa19.64■□□□□ 0.74
CCDC88B-202ENST00000356786 PPM1JQ5JR12 505 aa19.64■□□□□ 0.74
CCDC88B-202ENST00000356786 ANKRD22Q5VYY1 191 aa19.64■□□□□ 0.74
CCDC88B-202ENST00000356786 EIF3MQ7L2H7 374 aaKnown RBP19.64■□□□□ 0.74
CCDC88B-202ENST00000356786 SH3BP5LQ7L8J4 393 aa19.64■□□□□ 0.74
CCDC88B-202ENST00000356786 CDK20Q8IZL9 346 aa19.64■□□□□ 0.74
CCDC88B-202ENST00000356786 DEPDC4Q8N2C3 294 aa19.64■□□□□ 0.74
CCDC88B-202ENST00000356786 PNPLA8Q9NP80 782 aa19.64■□□□□ 0.74
CCDC88B-202ENST00000356786 PCDH12Q9NPG4 1184 aa19.64■□□□□ 0.74
CCDC88B-202ENST00000356786 CLN6Q9NWW5 311 aa19.64■□□□□ 0.74
CCDC88B-202ENST00000356786 NKX1-2Q9UD57 310 aaPredicted RBP19.64■□□□□ 0.74
CCDC88B-202ENST00000356786 SLC7A8Q9UHI5 535 aa19.64■□□□□ 0.74
CCDC88B-202ENST00000356786 C17orf102A2RUQ5 167 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 KCNU1A8MYU2 1149 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 ERCC2P18074 760 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 ZNF317Q96PQ6 595 aaPredicted RBP19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 RHOJQ9H4E5 214 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 G3V2T6 193 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 BTN3A3O00478 584 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 ULK1O75385 1050 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 MED22Q15528 200 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 C10orf82Q8WW14 230 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 SMARCD1Q96GM5 515 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 PPP3R2Q96LZ3 170 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 ZNF570Q96NI8 536 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 YIPF2Q9BWQ6 316 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 DNAJC28Q9NX36 388 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 SMPD3Q9NY59 655 aaPredicted RBP19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 HACL1Q9UJ83 578 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 CCDC189A1A4V9 331 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 IFRD1O00458 451 aaPredicted RBP19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 MT-ND1P03886 318 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 CCNB1P14635 433 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 PSMA3P25788 255 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 CRATP43155 626 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 SLC27A1Q6PCB7 646 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 THAP5Q7Z6K1 395 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 NT5DC4Q86YG4 428 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 LRRC17Q8N6Y2 441 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 REPS2Q8NFH8 660 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 DNERQ8NFT8 737 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 P2RY11Q96G91 374 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 SERPINB11Q96P15 392 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 FAM126AQ9BYI3 521 aaPredicted RBP19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 GIN1Q9NXP7 522 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 RWDD3Q9Y3V2 267 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 AKAP12Q02952 1782 aa19.64■□□□□ 0.73
CCDC88B-202ENST00000356786 ARL13AQ5H913 290 aaPredicted RBP19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 INTS11Q5TA45 600 aaKnown RBP19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 OVOS1Q6IE37 1185 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 CRISPLD1Q9H336 500 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 TMEM134Q9H6X4 195 aa19.63■□□□□ 0.73
CCDC88B-202ENST00000356786 PCDH18Q9HCL0 1135 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms