RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 GDF10P55107 478 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 PTSQ03393 145 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 GALNT3Q14435 633 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 ZCCHC8Q6NZY4 707 aaKnown RBP8.75□□□□□ -1.01
RTN3-202ENST00000339997 ZNF781Q8N8C0 355 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 ZNF671Q8TAW3 534 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 SERAC1Q96JX3 654 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 EFR3BQ9Y2G0 817 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 KDM6AO15550 1401 aaPredicted RBP8.75□□□□□ -1.01
RTN3-202ENST00000339997 MAGEB16A2A368 324 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 METTL18O95568 372 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 TOP3BO95985 862 aaKnown RBP8.75□□□□□ -1.01
RTN3-202ENST00000339997 PAICSP22234 425 aaKnown RBP8.75□□□□□ -1.01
RTN3-202ENST00000339997 ALDH7A1P49419 539 aaKnown RBP8.75□□□□□ -1.01
RTN3-202ENST00000339997 TBX4P57082 545 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 OTOP3Q7RTS5 596 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 TRIM74Q86UV6 250 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 TRIM73Q86UV7 250 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 KLHL31Q9H511 634 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 PNPLA3Q9NST1 481 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 PLLPQ9Y342 182 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 ACTL7BQ9Y614 415 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 SNCAIPQ9Y6H5 919 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 TPRP12270 2363 aaKnown RBP8.75□□□□□ -1.01
RTN3-202ENST00000339997 ADAMTS7Q9UKP4 1686 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 PDLIM1O00151 329 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 ACKR2O00590 384 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 FANCGO15287 622 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 CHADO15335 359 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 FOXD2O60548 495 aaPredicted RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 POU2F1P14859 743 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 ATP5F1P24539 256 aaPredicted RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 CASP9P55211 416 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 STX4Q12846 297 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 CBX3Q13185 183 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 MSLNQ13421 630 aaPredicted RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 KRR1Q13601 381 aaKnown RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 PYDC2Q56P42 97 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 RAP1GAP2Q684P5 730 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 PRMT9Q6P2P2 845 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 CRTC3Q6UUV7 619 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 METTL7BQ6UX53 244 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 PYROXD2Q8N2H3 581 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 EIF1ADQ8N9N8 165 aaKnown RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 CHST13Q8NET6 341 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 MCFD2Q8NI22 146 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 NXNL1Q96CM4 212 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 GFM1Q96RP9 751 aaKnown RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 HSD17B14Q9BPX1 270 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 SLC39A3Q9BRY0 314 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 PDGFDQ9GZP0 370 aaPredicted RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 RHBGQ9H310 441 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 OPTCQ9UBM4 332 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 SLC25A13Q9UJS0 675 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 PSMD13Q9UNM6 376 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 NEMP2A6NFY4 417 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 H0Y858 1186 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 NOS1APO75052 506 aaPredicted RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 TSPAN9O75954 239 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 CLTBP09497 229 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 LTA4HP09960 611 aaKnown RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 MYL12AP19105 171 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 EPORP19235 508 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 TYMPP19971 482 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 ZNF143P52747 638 aaPredicted RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 CXCL9Q07325 125 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 COL9A2Q14055 689 aaPredicted RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 DSG4Q86SJ6 1040 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 ZNF554Q86TJ5 538 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 SVOPQ8N4V2 548 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 AMER2Q8N7J2 671 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 LRRC57Q8N9N7 239 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 RP9Q8TA86 221 aaKnown RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 RAET1EQ8TD07 263 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 PTCD3Q96EY7 689 aaKnown RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 TCF12Q99081 682 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 CYP3A43Q9HB55 503 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 TMEM216Q9P0N5 145 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 MORF4L1Q9UBU8 362 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 TUBGCP4Q9UGJ1 667 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 IKZF3Q9UKT9 509 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 SLC12A4Q9UP95 1085 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 VPS9D1Q9Y2B5 631 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 RAP2CQ9Y3L5 183 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 TRIM17Q9Y577 477 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 XRN1Q8IZH2 1706 aaKnown RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 E7ENX8 843 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 CCNKO75909 580 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 ITGAVP06756 1048 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 CCNB1P14635 433 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 CTPS1P17812 591 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 MSH3P20585 1137 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 GPR15P49685 360 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 ATXN1P54253 815 aaKnown RBP8.74□□□□□ -1.01
RTN3-202ENST00000339997 TPTEP56180 551 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 IL2P60568 153 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 BEX3Q00994 111 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 GNA12Q03113 381 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 GAD2Q05329 585 aa8.74□□□□□ -1.01
RTN3-202ENST00000339997 GSTA3Q16772 222 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms