RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CAB39LQ9H9S4 337 aa13.49□□□□□ -0.25
HMGB1-202ENST00000339872 PIDD1Q9HB75 910 aa13.49□□□□□ -0.25
HMGB1-202ENST00000339872 KIAA1522Q9P206 1035 aaPredicted RBP13.49□□□□□ -0.25
HMGB1-202ENST00000339872 KCTD3Q9Y597 815 aa13.49□□□□□ -0.25
HMGB1-202ENST00000339872 ARL5AQ9Y689 179 aa13.49□□□□□ -0.25
HMGB1-202ENST00000339872 LAMA3Q16787 3333 aa13.49□□□□□ -0.25
HMGB1-202ENST00000339872 K7ERQ8 282 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 CCL22O00626 93 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 GLRA3O75311 464 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 AHSGP02765 367 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 NEFHP12036 1026 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 SERPINB4P48594 390 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 GRM3Q14832 879 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 ATXN7L2Q5T6C5 722 aaPredicted RBP13.48□□□□□ -0.25
HMGB1-202ENST00000339872 NEPROQ6NW34 567 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 ELMSAN1Q6PJG2 1045 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 NLRP9Q7RTR0 991 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 PIGWQ7Z7B1 504 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 ZC3HC1Q86WB0 502 aaKnown RBP13.48□□□□□ -0.25
HMGB1-202ENST00000339872 OTUD6BQ8N6M0 293 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 CCDC197Q8NCU1 140 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 PDCD6IPQ8WUM4 868 aaKnown RBP13.48□□□□□ -0.25
HMGB1-202ENST00000339872 ISL2Q96A47 359 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 ACDQ96AP0 544 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 ZSWIM3Q96MP5 696 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 PITPNM3Q9BZ71 974 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 SLCO1B3Q9NPD5 702 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 ARIH1Q9Y4X5 557 aaPredicted RBP13.48□□□□□ -0.25
HMGB1-202ENST00000339872 RAI2Q9Y5P3 530 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 BUD23O43709 281 aaKnown RBP13.48□□□□□ -0.25
HMGB1-202ENST00000339872 SIN3BO75182 1162 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 PDHA1P08559 390 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 GABRB3P28472 473 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 GMPRP36959 345 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 MAGEA12P43365 314 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 PRAMEP78395 509 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 CBX2Q14781 532 aaPredicted RBP13.48□□□□□ -0.25
HMGB1-202ENST00000339872 ZNF77Q15935 545 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 PLEKHG6Q3KR16 790 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 TMEM25Q86YD3 366 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 C12orf76Q8N812 135 aaPredicted RBP13.48□□□□□ -0.25
HMGB1-202ENST00000339872 ACVR1CQ8NER5 493 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 LPCAT1Q8NF37 534 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 BRSK1Q8TDC3 778 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 CABS1Q96KC9 395 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 GPR22Q99680 433 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 TM6SF2Q9BZW4 377 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 TLE6Q9H808 572 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 ABCB8Q9NUT2 735 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 SLC39A10Q9ULF5 831 aa13.48□□□□□ -0.25
HMGB1-202ENST00000339872 MRPS23Q9Y3D9 190 aaKnown RBP13.48□□□□□ -0.25
HMGB1-202ENST00000339872 NEDD8-MDP1E9PL57 170 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 ZNF197O14709 1029 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 SNX3O60493 162 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 SAT1P21673 171 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 ARSDP51689 593 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 TMPRSS15P98073 1019 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 NSUN2Q08J23 767 aaKnown RBP eCLIP13.47□□□□□ -0.25
HMGB1-202ENST00000339872 TRAF2Q12933 501 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 LAMB3Q13751 1172 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 DLG2Q15700 870 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 RNF43Q68DV7 783 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 NCEH1Q6PIU2 408 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 PTAR1Q7Z6K3 402 aaPredicted RBP13.47□□□□□ -0.25
HMGB1-202ENST00000339872 CCDC63Q8NA47 563 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 C2CD4AQ8NCU7 369 aaPredicted RBP13.47□□□□□ -0.25
HMGB1-202ENST00000339872 OR6P1Q8NGX9 317 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 CALML6Q8TD86 181 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 GDPD5Q8WTR4 605 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 SMG7Q92540 1137 aaKnown RBP13.47□□□□□ -0.25
HMGB1-202ENST00000339872 HDAC10Q969S8 669 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 DNAJC1Q96KC8 554 aaKnown RBP13.47□□□□□ -0.25
HMGB1-202ENST00000339872 MECRQ9BV79 373 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 MANSC1Q9H8J5 431 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 FBXO5Q9UKT4 447 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 PHTF1Q9UMS5 762 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 CDH23Q9H251 3354 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 NUP210Q8TEM1 1887 aaPredicted RBP13.47□□□□□ -0.25
HMGB1-202ENST00000339872 SOBPA7XYQ1 873 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 SMAD6O43541 496 aaKnown RBP13.47□□□□□ -0.25
HMGB1-202ENST00000339872 PRLP01236 227 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 BGNP21810 368 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 NRIP1P48552 1158 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 IRX4P78413 519 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 USP4Q13107 963 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 PTPRCAPQ14761 206 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 N4BP2L1Q5TBK1 243 aaPredicted RBP13.47□□□□□ -0.25
HMGB1-202ENST00000339872 CGB2Q6NT52 195 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 C16orf46Q6P387 395 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 ARID3BQ8IVW6 561 aaPredicted RBP13.47□□□□□ -0.25
HMGB1-202ENST00000339872 ANKS4BQ8N8V4 417 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 GABPB2Q8TAK5 448 aaPredicted RBP13.47□□□□□ -0.25
HMGB1-202ENST00000339872 ITFG1Q8TB96 612 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 BBS2Q9BXC9 721 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 PBX4Q9BYU1 374 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 NKX2-4Q9H2Z4 354 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 DCDC2Q9UHG0 476 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 INTS6Q9UL03 887 aaKnown RBP13.47□□□□□ -0.25
HMGB1-202ENST00000339872 SPO11Q9Y5K1 396 aa13.47□□□□□ -0.25
HMGB1-202ENST00000339872 C2orf16Q68DN1 1984 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms