RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 CSH1P0DML2 217 aa8.79□□□□□ -1
USF3-201ENST00000316407 CSH2P0DML3 217 aa8.79□□□□□ -1
USF3-201ENST00000316407 BIKQ13323 160 aa8.79□□□□□ -1
USF3-201ENST00000316407 MCOLN2Q8IZK6 566 aa8.79□□□□□ -1
USF3-201ENST00000316407 KAT5Q92993 513 aa8.79□□□□□ -1
USF3-201ENST00000316407 RAB26Q9ULW5 256 aa8.79□□□□□ -1
USF3-201ENST00000316407 SH3BP1Q9Y3L3 701 aa8.79□□□□□ -1
USF3-201ENST00000316407 KPNA3O00505 521 aaPredicted RBP8.79□□□□□ -1
USF3-201ENST00000316407 ABLIM1O14639 778 aa8.79□□□□□ -1
USF3-201ENST00000316407 SIM2Q14190 667 aaPredicted RBP8.79□□□□□ -1
USF3-201ENST00000316407 KLHL5Q96PQ7 755 aa8.79□□□□□ -1
USF3-201ENST00000316407 MOV10Q9HCE1 1003 aaKnown RBP8.79□□□□□ -1
USF3-201ENST00000316407 PCDHA3Q9Y5H8 950 aa8.79□□□□□ -1
USF3-201ENST00000316407 CLTCL1P53675 1640 aa8.79□□□□□ -1
USF3-201ENST00000316407 SMCO3A2RU48 225 aa8.79□□□□□ -1
USF3-201ENST00000316407 DBIP07108 87 aaKnown RBP8.79□□□□□ -1
USF3-201ENST00000316407 FSHRP23945 695 aa8.79□□□□□ -1
USF3-201ENST00000316407 CDH17Q12864 832 aa8.79□□□□□ -1
USF3-201ENST00000316407 PTPAQ15257 358 aa8.79□□□□□ -1
USF3-201ENST00000316407 C12orf65Q9H3J6 166 aaKnown RBP8.79□□□□□ -1
USF3-201ENST00000316407 ADGRE2Q9UHX3 823 aa8.79□□□□□ -1
USF3-201ENST00000316407 A0A087X1B8 175 aa8.78□□□□□ -1
USF3-201ENST00000316407 OR6A2O95222 327 aa8.78□□□□□ -1
USF3-201ENST00000316407 GZMAP12544 262 aa8.78□□□□□ -1
USF3-201ENST00000316407 TNFRSF8P28908 595 aa8.78□□□□□ -1
USF3-201ENST00000316407 KHDC1Q4VXA5 237 aaKnown RBP8.78□□□□□ -1
USF3-201ENST00000316407 DQX1Q8TE96 717 aaKnown RBP8.78□□□□□ -1
USF3-201ENST00000316407 EMID1Q96A84 441 aaPredicted RBP8.78□□□□□ -1
USF3-201ENST00000316407 TBL1YQ9BQ87 522 aa8.78□□□□□ -1
USF3-201ENST00000316407 IGSF1Q8N6C5 1336 aa8.78□□□□□ -1
USF3-201ENST00000316407 PGRP06401 933 aa8.78□□□□□ -1
USF3-201ENST00000316407 HGFP14210 728 aa8.78□□□□□ -1
USF3-201ENST00000316407 FXR2P51116 673 aaKnown RBP eCLIP8.78□□□□□ -1
USF3-201ENST00000316407 NCCRP1Q6ZVX7 275 aaPredicted RBP8.78□□□□□ -1
USF3-201ENST00000316407 GET4Q7L5D6 327 aaPredicted RBP8.78□□□□□ -1
USF3-201ENST00000316407 PTCD2Q8WV60 388 aaKnown RBP8.78□□□□□ -1
USF3-201ENST00000316407 CNPPD1Q9BV87 410 aa8.78□□□□□ -1
USF3-201ENST00000316407 CISHQ9NSE2 258 aa8.78□□□□□ -1
USF3-201ENST00000316407 ANGPT4Q9Y264 503 aa8.78□□□□□ -1
USF3-201ENST00000316407 OR2AT4A6NND4 320 aa8.78□□□□□ -1
USF3-201ENST00000316407 ACAT1P24752 427 aaKnown RBP8.78□□□□□ -1
USF3-201ENST00000316407 XIAPP98170 497 aa8.78□□□□□ -1
USF3-201ENST00000316407 TOMM20Q15388 145 aa8.78□□□□□ -1
USF3-201ENST00000316407 KYAT1Q16773 422 aa8.78□□□□□ -1
USF3-201ENST00000316407 TTC23Q5W5X9 447 aa8.78□□□□□ -1
USF3-201ENST00000316407 PYHIN1Q6K0P9 492 aa8.78□□□□□ -1
USF3-201ENST00000316407 INO80EQ8NBZ0 244 aaPredicted RBP8.78□□□□□ -1
USF3-201ENST00000316407 CLIP3Q96DZ5 547 aa8.78□□□□□ -1
USF3-201ENST00000316407 IPO13O94829 963 aaKnown RBP8.78□□□□□ -1
USF3-201ENST00000316407 IFNA7P01567 189 aa8.78□□□□□ -1
USF3-201ENST00000316407 SERPINF2P08697 491 aa8.78□□□□□ -1
USF3-201ENST00000316407 ALDH3A2P51648 485 aa8.78□□□□□ -1
USF3-201ENST00000316407 ECT2LQ008S8 904 aa8.78□□□□□ -1
USF3-201ENST00000316407 ZNF543Q08ER8 600 aa8.78□□□□□ -1
USF3-201ENST00000316407 GRB14Q14449 540 aa8.78□□□□□ -1
USF3-201ENST00000316407 EPHA7Q15375 998 aa8.78□□□□□ -1
USF3-201ENST00000316407 GPAT3Q53EU6 434 aa8.78□□□□□ -1
USF3-201ENST00000316407 ILDR2Q71H61 639 aa8.78□□□□□ -1
USF3-201ENST00000316407 DEPDC4Q8N2C3 294 aa8.78□□□□□ -1
USF3-201ENST00000316407 FAM98AQ8NCA5 519 aaKnown RBP8.78□□□□□ -1
USF3-201ENST00000316407 NELL1Q92832 810 aa8.78□□□□□ -1
USF3-201ENST00000316407 MSANTD3Q96H12 275 aa8.78□□□□□ -1
USF3-201ENST00000316407 PNPOQ9NVS9 261 aa8.78□□□□□ -1
USF3-201ENST00000316407 RGSL1A5PLK6 1076 aa8.78□□□□□ -1
USF3-201ENST00000316407 TRIM38O00635 465 aa8.78□□□□□ -1
USF3-201ENST00000316407 MGRN1O60291 552 aa8.78□□□□□ -1
USF3-201ENST00000316407 FMO3P31513 532 aa8.78□□□□□ -1
USF3-201ENST00000316407 CTSKP43235 329 aa8.78□□□□□ -1
USF3-201ENST00000316407 RPL38P63173 70 aaKnown RBP8.78□□□□□ -1
USF3-201ENST00000316407 SPP2Q13103 211 aa8.78□□□□□ -1
USF3-201ENST00000316407 NKD1Q969G9 470 aa8.78□□□□□ -1
USF3-201ENST00000316407 FUCA2Q9BTY2 467 aa8.78□□□□□ -1
USF3-201ENST00000316407 C1QTNF1Q9BXJ1 281 aa8.78□□□□□ -1
USF3-201ENST00000316407 ARHGAP28Q9P2N2 729 aa8.78□□□□□ -1
USF3-201ENST00000316407 MAU2Q9Y6X3 613 aa8.78□□□□□ -1
USF3-201ENST00000316407 PRKD3O94806 890 aa8.78□□□□□ -1
USF3-201ENST00000316407 THEGLP0DJG4 465 aa8.78□□□□□ -1
USF3-201ENST00000316407 PCSK1P29120 753 aa8.78□□□□□ -1
USF3-201ENST00000316407 MYL6P60660 151 aa8.78□□□□□ -1
USF3-201ENST00000316407 TBC1D17Q9HA65 648 aa8.78□□□□□ -1
USF3-201ENST00000316407 OVOS2A0A0G2JMS6 1433 aa8.78□□□□□ -1
USF3-201ENST00000316407 GSAPA4D1B5 854 aa8.78□□□□□ -1
USF3-201ENST00000316407 SRRM3A6NNA2 597 aaPredicted RBP8.78□□□□□ -1
USF3-201ENST00000316407 AIREO43918 545 aa8.78□□□□□ -1
USF3-201ENST00000316407 PSMB4P28070 264 aa8.78□□□□□ -1
USF3-201ENST00000316407 STXBP1P61764 594 aaKnown RBP8.78□□□□□ -1
USF3-201ENST00000316407 PLD1Q13393 1074 aa8.78□□□□□ -1
USF3-201ENST00000316407 ALX1Q15699 326 aa8.78□□□□□ -1
USF3-201ENST00000316407 VPS72Q15906 364 aa8.78□□□□□ -1
USF3-201ENST00000316407 PITRM1Q5JRX3 1037 aa8.78□□□□□ -1
USF3-201ENST00000316407 LINGO2Q7L985 606 aa8.78□□□□□ -1
USF3-201ENST00000316407 CLYBLQ8N0X4 340 aa8.78□□□□□ -1
USF3-201ENST00000316407 EMILIN2Q9BXX0 1053 aa8.78□□□□□ -1
USF3-201ENST00000316407 ARL15Q9NXU5 204 aa8.78□□□□□ -1
USF3-201ENST00000316407 CHP2O43745 196 aa8.78□□□□□ -1
USF3-201ENST00000316407 PON2Q15165 354 aa8.78□□□□□ -1
USF3-201ENST00000316407 DNAJB7Q7Z6W7 309 aaPredicted RBP8.78□□□□□ -1
USF3-201ENST00000316407 OOSP2Q86WS3 158 aa8.78□□□□□ -1
USF3-201ENST00000316407 NSMCE3Q96MG7 304 aa8.78□□□□□ -1
USF3-201ENST00000316407 CATSPERZQ9NTU4 200 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms