RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 RNF157Q96PX1 679 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 TTYH1Q9H313 450 aaPredicted RBP6.46□□□□□ -1.38
VPS35-201ENST00000299138 ZNF221Q9UK13 617 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 DERAQ9Y315 318 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 LAMB1P07942 1786 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 A0A0A0MRY4 1105 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 C19orf81C9J6K1 198 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 GRIN3BO60391 1043 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 PORP16435 677 aaPredicted RBP6.46□□□□□ -1.38
VPS35-201ENST00000299138 KLRK1P26718 216 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 PNPLA4P41247 253 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 STAT5AP42229 794 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 CCR3P51677 355 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 STAT5BP51692 787 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 RBP5P82980 135 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 OVGP1Q12889 678 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 KLF10Q13118 480 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 PRKG2Q13237 762 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 EMC2Q15006 297 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 CHST13Q8NET6 341 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 PJA1Q8NG27 643 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 DCUN1D1Q96GG9 259 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 HSFY1Q96LI6 401 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 SPATA13Q96N96 652 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 MCEEQ96PE7 176 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 PDCD2LQ9BRP1 358 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 TSEN34Q9BSV6 310 aaKnown RBP6.46□□□□□ -1.38
VPS35-201ENST00000299138 POLR3FQ9H1D9 316 aaPredicted RBP6.46□□□□□ -1.38
VPS35-201ENST00000299138 CPVLQ9H3G5 476 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 RYDENQ9NUL5 291 aaKnown RBP6.46□□□□□ -1.38
VPS35-201ENST00000299138 TBC1D30Q9Y2I9 924 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 TEX264Q9Y6I9 313 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 AP1M2Q9Y6Q5 423 aa6.46□□□□□ -1.38
VPS35-201ENST00000299138 LRRC14BA6NHZ5 514 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ANKRD63C9JTQ0 380 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 NDUFB5O43674 189 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 B4GALT4O60513 344 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ENDOD1O94919 500 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ECDO95905 644 aaPredicted RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 ADRB2P07550 413 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 SLC7A1P30825 629 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 DDX39BQ13838 428 aaKnown RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 CA9Q16790 459 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ZRANB3Q5FWF4 1079 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 PYHIN1Q6K0P9 492 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 PTF1AQ7RTS3 328 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ZNF366Q8N895 744 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ANKRD52Q8NB46 1076 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 OLIG1Q8TAK6 271 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 CDH19Q9H159 772 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 NGRNQ9NPE2 291 aaKnown RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 KCTD5Q9NXV2 234 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 CLEC4AQ9UMR7 237 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 NPPAP01160 153 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 EPB42P16452 691 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 PSMD8P48556 350 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 PGDP52209 483 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 OTUD3Q5T2D3 398 aaPredicted RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 STYK1Q6J9G0 422 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 MFSD2AQ8NA29 543 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 SMYD1Q8NB12 490 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 DNERQ8NFT8 737 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 POF1BQ8WVV4 589 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 FAR1Q8WVX9 515 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ZUFSPQ96AP4 578 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 JPH1Q9HDC5 661 aaPredicted RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 MGAT4AQ9UM21 535 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 RGPD2P0DJD1 1756 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 TESPA1A2RU30 521 aaPredicted RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 EVPLLA8MZ36 301 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 SEC24AO95486 1093 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 PRKAR2AP13861 404 aaKnown RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 MAN2A2P49641 1150 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 HIRAP54198 1017 aaPredicted RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 C2orf76Q3KRA6 126 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 INTS11Q5TA45 600 aaKnown RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 GPAT2Q6NUI2 795 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 LZTR1Q8N653 840 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 SETD9Q8NE22 299 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 HEXIM2Q96MH2 286 aaKnown RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 ZNF560Q96MR9 790 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 KATNAL1Q9BW62 490 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 MND1Q9BWT6 205 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 FGFBP2Q9BYJ0 223 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 HIPK3Q9H422 1215 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 DUSP12Q9UNI6 340 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ALDH1A2O94788 518 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 GH2P01242 217 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 TSPAN19P0C672 248 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ACO1P21399 889 aaKnown RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 CD40LGP29965 261 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 TMBIM6P55061 237 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 LRRC70Q7Z2Q7 622 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ADCK2Q7Z695 626 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 AIFM2Q9BRQ8 373 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 RPF1Q9H9Y2 349 aaKnown RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 DNAAF2Q9NVR5 837 aaKnown RBP6.45□□□□□ -1.38
VPS35-201ENST00000299138 PLA2G4CQ9UP65 541 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ZNF197O14709 1029 aa6.45□□□□□ -1.38
VPS35-201ENST00000299138 ZNF682O95780 498 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms