RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TFAP2BQ92481 460 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 SLCO2A1Q92959 643 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 ADAM2Q99965 735 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 CHID1Q9BWS9 393 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 BTBD3Q9Y2F9 522 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 SQORQ9Y6N5 450 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 MYH11P35749 1972 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 A0A1B0GVG6 124 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 CABYRO75952 493 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 LTFP02788 710 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 ELNP15502 786 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 GOT1P17174 413 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 LHX1P48742 406 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 TUBP50607 506 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 TKTL1P51854 596 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 WSCD1Q658N2 575 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 SGIP1Q9BQI5 828 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 MRPL45Q9BRJ2 306 aaKnown RBP15.47■□□□□ 0.07
SHH-201ENST00000297261 R3HDMLQ9H3Y0 253 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 RGS18Q9NS28 235 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 A6NHS1 94 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 TMEM114B3SHH9 223 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 NRP2O60462 931 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 HIST1H2AGP0C0S8 130 aaPredicted RBP15.47■□□□□ 0.07
SHH-201ENST00000297261 SLC2A4P14672 509 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 TCF4P15884 667 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 HIST1H2ADP20671 130 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 SQLEQ14534 574 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 PCBP1Q15365 356 aaKnown RBP eCLIP15.47■□□□□ 0.07
SHH-201ENST00000297261 CACHD1Q5VU97 1274 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 ANKS6Q68DC2 871 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 ARHGAP36Q6ZRI8 547 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 HIST1H2AHQ96KK5 128 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 HIST1H2AJQ99878 128 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 H2AFJQ9BTM1 129 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 ELOVL4Q9GZR5 314 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 CIDEBQ9UHD4 219 aa15.47■□□□□ 0.07
SHH-201ENST00000297261 RNASEH1O60930 286 aaKnown RBP15.46■□□□□ 0.07
SHH-201ENST00000297261 RPLP2P05387 115 aaKnown RBP15.46■□□□□ 0.07
SHH-201ENST00000297261 CSH1P0DML2 217 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 CSH2P0DML3 217 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 GJA8P48165 433 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 POU5F1Q01860 360 aaKnown RBP15.46■□□□□ 0.07
SHH-201ENST00000297261 ADGRE1Q14246 886 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 PFKFB4Q16877 469 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 METTL21CQ5VZV1 264 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 CDCA2Q69YH5 1023 aaPredicted RBP15.46■□□□□ 0.07
SHH-201ENST00000297261 TXNRD3NBQ6F5E7 133 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 ILDR2Q71H61 639 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 C11orf74Q86VG3 221 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 SPPL2CQ8IUH8 684 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 PGAM4Q8N0Y7 254 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 FBXO39Q8N4B4 442 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 SNX31Q8N9S9 440 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 SENP8Q96LD8 212 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 ACOX2Q99424 681 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 TRIM62Q9BVG3 475 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 GATA5Q9BWX5 397 aaPredicted RBP15.46■□□□□ 0.07
SHH-201ENST00000297261 WWOXQ9NZC7 414 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 MORF4L1Q9UBU8 362 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 DNAJB4Q9UDY4 337 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 C9JVG2 144 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 H6PDO95479 791 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 RGS4P49798 205 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 MOGSQ13724 837 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 CEP78Q5JTW2 689 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 TMEM26Q6ZUK4 368 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 TREML1Q86YW5 311 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 SEMA4BQ9NPR2 832 aaPredicted RBP15.46■□□□□ 0.07
SHH-201ENST00000297261 IPPQ9Y573 584 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 RAD54BQ9Y620 910 aa15.46■□□□□ 0.07
SHH-201ENST00000297261 NCAM2O15394 837 aa15.46■□□□□ 0.06
SHH-201ENST00000297261 CILPO75339 1184 aa15.46■□□□□ 0.06
SHH-201ENST00000297261 AMHP03971 560 aa15.46■□□□□ 0.06
SHH-201ENST00000297261 LBPP18428 481 aa15.46■□□□□ 0.06
SHH-201ENST00000297261 SEPHS1P49903 392 aa15.46■□□□□ 0.06
SHH-201ENST00000297261 CRHR2Q13324 411 aa15.46■□□□□ 0.06
SHH-201ENST00000297261 MSLNQ13421 630 aaPredicted RBP15.46■□□□□ 0.06
SHH-201ENST00000297261 PPP1R26Q5T8A7 1209 aaPredicted RBP15.46■□□□□ 0.06
SHH-201ENST00000297261 TAPT1Q6NXT6 567 aa15.46■□□□□ 0.06
SHH-201ENST00000297261 ASRGL1Q7L266 308 aa15.46■□□□□ 0.06
SHH-201ENST00000297261 UNC93AQ86WB7 457 aa15.46■□□□□ 0.06
SHH-201ENST00000297261 MIPEPQ99797 713 aa15.46■□□□□ 0.06
SHH-201ENST00000297261 EFR3BQ9Y2G0 817 aa15.46■□□□□ 0.06
SHH-201ENST00000297261 STYXL1Q9Y6J8 313 aa15.46■□□□□ 0.06
SHH-201ENST00000297261 IGKV6D-21A0A0A0MT36 114 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 HACD1B0YJ81 288 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 STX7O15400 261 aaKnown RBP15.45■□□□□ 0.06
SHH-201ENST00000297261 CYP1A1P04798 512 aaPredicted RBP15.45■□□□□ 0.06
SHH-201ENST00000297261 CFHP08603 1231 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 UNGP13051 313 aaPredicted RBP15.45■□□□□ 0.06
SHH-201ENST00000297261 HGFP14210 728 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 XRCC1P18887 633 aaPredicted RBP15.45■□□□□ 0.06
SHH-201ENST00000297261 GPX6P59796 221 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 LSM12Q3MHD2 195 aaKnown RBP15.45■□□□□ 0.06
SHH-201ENST00000297261 TRIM69Q86WT6 500 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 PLD5Q8N7P1 536 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 METTL6Q8TCB7 284 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 PPP1R2P1Q96PQ5 205 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 NUAK2Q9H093 628 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms