RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 BBS12Q6ZW61 710 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 HIST3H2AQ7L7L0 130 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 RAB43Q86YS6 212 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 DEPDC4Q8N2C3 294 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 HIST1H2ACQ93077 130 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 C2CD2LO14523 706 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 S100A3P33764 101 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 SNX7Q9UNH6 387 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF638Q14966 1978 aaKnown RBP9.93□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF135P52742 658 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-201ENST00000295550 IL18R1Q13478 541 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 CAMK1Q14012 370 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 GRIN2DO15399 1336 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 LOXHD1Q8IVV2 1947 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 ACVR2BQ13705 512 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 GNA13Q14344 377 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 MGAT5BQ3V5L5 792 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 TATDN1Q6P1N9 297 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 OR8H3Q8N146 312 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 SPAG4Q9NPE6 437 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 XPNPEP3Q9NQH7 507 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 CTSHP09668 335 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 PTP4A2Q12974 167 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.93□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF540Q8NDQ6 660 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 SSU72Q9NP77 194 aaKnown RBP9.93□□□□□ -0.82
COL6A3-201ENST00000295550 TRHDEQ9UKU6 1024 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 PMF1-BGLAPU3KQ54 211 aa9.93□□□□□ -0.82
COL6A3-201ENST00000295550 CCNKO75909 580 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 ZBTB7AO95365 584 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 PGK1P00558 417 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 ANPEPP15144 967 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 ITGB6P18564 788 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 DPYSQ14117 519 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 FBXO47Q5MNV8 452 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 MEIOBQ8N635 442 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 FBXO30Q8TB52 745 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 PHF10Q8WUB8 498 aaKnown RBP9.92□□□□□ -0.82
COL6A3-201ENST00000295550 NLNQ9BYT8 704 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 MORF4L1Q9UBU8 362 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 A0A1W2PQ72 361 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 HADHBP55084 474 aaKnown RBP9.92□□□□□ -0.82
COL6A3-201ENST00000295550 GRSF1Q12849 480 aaKnown RBP eCLIP9.92□□□□□ -0.82
COL6A3-201ENST00000295550 SKA1Q96BD8 255 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 ETNK2Q9NVF9 386 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 TMEM216Q9P0N5 145 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 COL1A1P02452 1464 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-201ENST00000295550 RGS14O43566 566 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 OMPP47874 163 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 NDST1P52848 882 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 PLK1P53350 603 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 CYP20A1Q6UW02 462 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 PTAR1Q7Z6K3 402 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-201ENST00000295550 CERS5Q8N5B7 392 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 ZC3H10Q96K80 434 aaKnown RBP9.92□□□□□ -0.82
COL6A3-201ENST00000295550 PRKD2Q9BZL6 878 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 CRISPLD1Q9H336 500 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 VPS28Q9UK41 221 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 FAM172BPA6NC97 362 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 COX7A2P14406 83 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 FAUP35544 74 aaKnown RBP9.92□□□□□ -0.82
COL6A3-201ENST00000295550 ADIGQ0VDE8 80 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 SAMD7Q7Z3H4 446 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 CAB39LQ9H9S4 337 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 ENTPD4Q9Y227 616 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 SPTLC1O15269 473 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF286BP0CG31 522 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 CETPP11597 493 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 CYP2A7P20853 494 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 UBAP2LQ14157 1087 aaKnown RBP9.92□□□□□ -0.82
COL6A3-201ENST00000295550 ASTE1Q2TB18 679 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF410Q86VK4 478 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 GPSM1Q86YR5 675 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 CARNMT1Q8N4J0 409 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 ZSWIM2Q8NEG5 633 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 CLCC1Q96S66 551 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 DGKBQ9Y6T7 804 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 ENTPD5O75356 428 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 SERPINA1P01009 418 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 IL18Q14116 193 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 ARHGAP15Q53QZ3 475 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 TBL1YQ9BQ87 522 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 CDHR5Q9HBB8 845 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 GPN1Q9HCN4 374 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-201ENST00000295550 SLC35C2Q9NQQ7 365 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 BRWD1Q9NSI6 2320 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 A0A0G2JPF8 293 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 C17orf102A2RUQ5 167 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 HNRNPCL3B7ZW38 293 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 TPP1O14773 563 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 OR5F1O95221 314 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 HNRNPCL4P0DMR1 293 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 ATF6P18850 670 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 RFX4Q33E94 735 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 RPRD1AQ96P16 312 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-201ENST00000295550 ACP6Q9NPH0 428 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 SSR3Q9UNL2 185 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 SNED1Q8TER0 1413 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 A0A0A0MRY4 1105 aa9.92□□□□□ -0.82
COL6A3-201ENST00000295550 RPLP2P05387 115 aaKnown RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms