RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 KDM7AQ6ZMT4 941 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 PARGQ86W56 976 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 DNAAF5Q86Y56 855 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 DCBLD1Q8N8Z6 715 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 FAM181AQ8N9Y4 354 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 DENND6BQ8NEG7 585 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 HCAR2Q8TDS4 363 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 FNIP1Q8TF40 1166 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 HNRNPLLQ8WVV9 542 aaKnown RBP9.84□□□□□ -0.83
VPS41-201ENST00000265745 CELF6Q96J87 481 aaKnown RBP9.84□□□□□ -0.83
VPS41-201ENST00000265745 PEBP4Q96S96 227 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 EIF3CQ99613 913 aaKnown RBP9.84□□□□□ -0.83
VPS41-201ENST00000265745 DUSP23Q9BVJ7 150 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 EDEM3Q9BZQ6 932 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 TRIM7Q9C029 511 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 NRSN2Q9GZP1 204 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 PDFQ9HBH1 243 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 NLGN3Q9NZ94 848 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 LHX3Q9UBR4 397 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 UBA2Q9UBT2 640 aaPredicted RBP9.84□□□□□ -0.83
VPS41-201ENST00000265745 PCSK1NQ9UHG2 260 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 IPO11Q9UI26 975 aaKnown RBP9.84□□□□□ -0.83
VPS41-201ENST00000265745 AP4E1Q9UPM8 1137 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 CSNK1G3Q9Y6M4 447 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 U3KQA8 63 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 A0A087WV48 116 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 EEF2KO00418 725 aaKnown RBP9.83□□□□□ -0.84
VPS41-201ENST00000265745 PRAMEF11O60813 436 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 NEBLO76041 1014 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 TM7SF2O76062 418 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 MT-CO3P00414 261 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 ALPPL2P10696 532 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 MYF5P13349 255 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 MIPP30301 263 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 PRKCIP41743 596 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 PAPOLAP51003 745 aaKnown RBP9.83□□□□□ -0.84
VPS41-201ENST00000265745 SUOXP51687 545 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 DAB2P98082 770 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 RTP5Q14D33 572 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 IQCB1Q15051 598 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 ASIC2Q16515 512 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 UGP2Q16851 508 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 COL28A1Q2UY09 1125 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 TMEM52BQ4KMG9 183 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 AFMIDQ63HM1 303 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 CAVIN1Q6NZI2 390 aaKnown RBP9.83□□□□□ -0.84
VPS41-201ENST00000265745 CYP4V2Q6ZWL3 525 aaPredicted RBP9.83□□□□□ -0.84
VPS41-201ENST00000265745 PSTKQ8IV42 348 aaKnown RBP9.83□□□□□ -0.84
VPS41-201ENST00000265745 ZNF548Q8NEK5 533 aaPredicted RBP9.83□□□□□ -0.84
VPS41-201ENST00000265745 NXPE2Q96DL1 559 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 EXOC2Q96KP1 924 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 APOLD1Q96LR9 279 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 ZNF641Q96N77 438 aaPredicted RBP9.83□□□□□ -0.84
VPS41-201ENST00000265745 HS3ST6Q96QI5 342 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 SLC39A8Q9C0K1 460 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 SUV39H2Q9H5I1 410 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 DHX35Q9H5Z1 703 aaKnown RBP9.83□□□□□ -0.84
VPS41-201ENST00000265745 MBNL1Q9NR56 388 aaKnown RBP9.83□□□□□ -0.84
VPS41-201ENST00000265745 TSR3Q9UJK0 312 aaKnown RBP9.83□□□□□ -0.84
VPS41-201ENST00000265745 CLCA2Q9UQC9 943 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 ASXL3Q9C0F0 2248 aa9.83□□□□□ -0.84
VPS41-201ENST00000265745 ARID1BQ8NFD5 2236 aaPredicted RBP9.82□□□□□ -0.84
VPS41-201ENST00000265745 TSPAN11A1L157 253 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 ARHGAP42A6NI28 874 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 H3BM21 787 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 PRPSAP2O60256 369 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 OPA1O60313 960 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 BUB1BO60566 1050 aaPredicted RBP9.82□□□□□ -0.84
VPS41-201ENST00000265745 RNF8O76064 485 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 GP1BAP07359 652 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 SKILP12757 684 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 ERCC2P18074 760 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 RGRP47804 291 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 CSNK1DP48730 415 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 HCAR3P49019 387 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 YPEL5P62699 121 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 SEMG2Q02383 582 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 KLHL30Q0D2K2 578 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 PTK2BQ14289 1009 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 GRM3Q14832 879 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 KLHL40Q2TBA0 621 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 TMEM164Q5U3C3 297 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 CDCP2Q5VXM1 449 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 RFX8Q6ZV50 586 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 VPS36Q86VN1 386 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 CAMK1DQ8IU85 385 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 ARHGAP12Q8IWW6 846 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 DEPDC4Q8N2C3 294 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 TP53I13Q8NBR0 393 aaPredicted RBP9.82□□□□□ -0.84
VPS41-201ENST00000265745 CXorf40AQ8TE69 158 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 TUBGCP5Q96RT8 1024 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 KCTD15Q96SI1 283 aaPredicted RBP9.82□□□□□ -0.84
VPS41-201ENST00000265745 FUCA2Q9BTY2 467 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 SNRNP25Q9BV90 132 aaKnown RBP9.82□□□□□ -0.84
VPS41-201ENST00000265745 C1QTNF7Q9BXJ2 289 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 ISCUQ9H1K1 167 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 USP29Q9HBJ7 922 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 PCDH12Q9NPG4 1184 aa9.82□□□□□ -0.84
VPS41-201ENST00000265745 CNOT8Q9UFF9 292 aaKnown RBP9.82□□□□□ -0.84
VPS41-201ENST00000265745 PNMA8BQ9ULN7 279 aaPredicted RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms