RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 TNIP2Q8NFZ5 429 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 RP9Q8TA86 221 aaKnown RBP8.84□□□□□ -0.99
VAPB-201ENST00000265619 DEPDC1BQ8WUY9 529 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 ATL1Q8WXF7 558 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 VMP1Q96GC9 406 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 NARFLQ9H6Q4 476 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 PXMP2Q9NR77 195 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 CAB39Q9Y376 341 aaPredicted RBP8.84□□□□□ -0.99
VAPB-201ENST00000265619 ZFC3H1O60293 1989 aaKnown RBP8.84□□□□□ -0.99
VAPB-201ENST00000265619 FAM159BA6NKW6 160 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 SLC16A4O15374 487 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 ASNA1O43681 348 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 DYRK3O43781 588 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 INMTO95050 263 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 CELF2O95319 508 aaKnown RBP8.84□□□□□ -0.99
VAPB-201ENST00000265619 CES1P23141 567 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 PTPN20Q4JDL3 420 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 CMTR2Q8IYT2 770 aaKnown RBP8.84□□□□□ -0.99
VAPB-201ENST00000265619 SCML4Q8N228 414 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 ZCCHC7Q8N3Z6 543 aaKnown RBP8.84□□□□□ -0.99
VAPB-201ENST00000265619 PQLC3Q8N755 202 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 SPATA18Q8TC71 538 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 BEGAINQ9BUH8 593 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 TARS2Q9BW92 718 aaKnown RBP8.84□□□□□ -0.99
VAPB-201ENST00000265619 HMG20AQ9NP66 347 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 XPNPEP3Q9NQH7 507 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 UCKL1Q9NWZ5 548 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 MTMR10Q9NXD2 777 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 HOXC10Q9NYD6 342 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 TMEM9Q9P0T7 183 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 WARS2Q9UGM6 360 aaKnown RBP8.84□□□□□ -0.99
VAPB-201ENST00000265619 PCDHB12Q9Y5F1 795 aa8.84□□□□□ -0.99
VAPB-201ENST00000265619 TRIM24O15164 1050 aa8.83□□□□□ -1
VAPB-201ENST00000265619 COL6A1P12109 1028 aa8.83□□□□□ -1
VAPB-201ENST00000265619 ITGB6P18564 788 aa8.83□□□□□ -1
VAPB-201ENST00000265619 CBLP22681 906 aa8.83□□□□□ -1
VAPB-201ENST00000265619 SERPINB1P30740 379 aa8.83□□□□□ -1
VAPB-201ENST00000265619 HADHAP40939 763 aa8.83□□□□□ -1
VAPB-201ENST00000265619 GTF2A2P52657 109 aa8.83□□□□□ -1
VAPB-201ENST00000265619 ATAD3CQ5T2N8 411 aa8.83□□□□□ -1
VAPB-201ENST00000265619 PADI6Q6TGC4 694 aa8.83□□□□□ -1
VAPB-201ENST00000265619 TMEM270Q6UE05 265 aa8.83□□□□□ -1
VAPB-201ENST00000265619 CES3Q6UWW8 571 aa8.83□□□□□ -1
VAPB-201ENST00000265619 ABRAXAS1Q6UWZ7 409 aa8.83□□□□□ -1
VAPB-201ENST00000265619 NLGN4XQ8N0W4 816 aa8.83□□□□□ -1
VAPB-201ENST00000265619 MFSD2AQ8NA29 543 aa8.83□□□□□ -1
VAPB-201ENST00000265619 ACVR1CQ8NER5 493 aa8.83□□□□□ -1
VAPB-201ENST00000265619 VPS33AQ96AX1 596 aa8.83□□□□□ -1
VAPB-201ENST00000265619 CEP170P1Q96L14 293 aa8.83□□□□□ -1
VAPB-201ENST00000265619 MUS81Q96NY9 551 aa8.83□□□□□ -1
VAPB-201ENST00000265619 TCF12Q99081 682 aa8.83□□□□□ -1
VAPB-201ENST00000265619 DHRS9Q9BPW9 319 aa8.83□□□□□ -1
VAPB-201ENST00000265619 TMEM246Q9BRR3 403 aa8.83□□□□□ -1
VAPB-201ENST00000265619 ZBTB26Q9HCK0 441 aa8.83□□□□□ -1
VAPB-201ENST00000265619 C12orf4Q9NQ89 552 aa8.83□□□□□ -1
VAPB-201ENST00000265619 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.83□□□□□ -1
VAPB-201ENST00000265619 IP6K2Q9UHH9 426 aa8.83□□□□□ -1
VAPB-201ENST00000265619 ZDHHC2Q9UIJ5 367 aa8.83□□□□□ -1
VAPB-201ENST00000265619 MAGED1Q9Y5V3 778 aaPredicted RBP8.83□□□□□ -1
VAPB-201ENST00000265619 LTBP3Q9NS15 1303 aa8.83□□□□□ -1
VAPB-201ENST00000265619 DLGAP3O95886 979 aa8.83□□□□□ -1
VAPB-201ENST00000265619 BMP2P12643 396 aa8.83□□□□□ -1
VAPB-201ENST00000265619 ARCN1P48444 511 aaKnown RBP8.83□□□□□ -1
VAPB-201ENST00000265619 HLCSP50747 726 aa8.83□□□□□ -1
VAPB-201ENST00000265619 GNG2P59768 71 aa8.83□□□□□ -1
VAPB-201ENST00000265619 TUBA1BP68363 451 aa8.83□□□□□ -1
VAPB-201ENST00000265619 SLC25A11Q02978 314 aaKnown RBP8.83□□□□□ -1
VAPB-201ENST00000265619 TRIM32Q13049 653 aa8.83□□□□□ -1
VAPB-201ENST00000265619 ADPRMQ3LIE5 342 aa8.83□□□□□ -1
VAPB-201ENST00000265619 PYCR3Q53H96 274 aa8.83□□□□□ -1
VAPB-201ENST00000265619 LIN9Q5TKA1 542 aa8.83□□□□□ -1
VAPB-201ENST00000265619 CATSPERGQ6ZRH7 1159 aa8.83□□□□□ -1
VAPB-201ENST00000265619 TUBA1AQ71U36 451 aa8.83□□□□□ -1
VAPB-201ENST00000265619 FKBP9P1Q75LS8 142 aa8.83□□□□□ -1
VAPB-201ENST00000265619 THNSL1Q8IYQ7 743 aa8.83□□□□□ -1
VAPB-201ENST00000265619 EMC1Q8N766 993 aa8.83□□□□□ -1
VAPB-201ENST00000265619 JOSD2Q8TAC2 188 aa8.83□□□□□ -1
VAPB-201ENST00000265619 FNIP1Q8TF40 1166 aa8.83□□□□□ -1
VAPB-201ENST00000265619 RAB2BQ8WUD1 216 aa8.83□□□□□ -1
VAPB-201ENST00000265619 ELMO1Q92556 727 aa8.83□□□□□ -1
VAPB-201ENST00000265619 SLC45A3Q96JT2 553 aa8.83□□□□□ -1
VAPB-201ENST00000265619 CNDP1Q96KN2 507 aa8.83□□□□□ -1
VAPB-201ENST00000265619 SIGLEC10Q96LC7 697 aa8.83□□□□□ -1
VAPB-201ENST00000265619 TTYH2Q9BSA4 534 aa8.83□□□□□ -1
VAPB-201ENST00000265619 MTMR12Q9C0I1 747 aa8.83□□□□□ -1
VAPB-201ENST00000265619 CAB39LQ9H9S4 337 aa8.83□□□□□ -1
VAPB-201ENST00000265619 APOBEC3GQ9HC16 384 aaKnown RBP8.83□□□□□ -1
VAPB-201ENST00000265619 NMRK2Q9NPI5 230 aa8.83□□□□□ -1
VAPB-201ENST00000265619 GIMAP4Q9NUV9 329 aa8.83□□□□□ -1
VAPB-201ENST00000265619 EGFL7Q9UHF1 273 aa8.83□□□□□ -1
VAPB-201ENST00000265619 ZNF214Q9UL59 606 aaPredicted RBP8.83□□□□□ -1
VAPB-201ENST00000265619 RNF103-CHMP3A0A140T963 221 aa8.83□□□□□ -1
VAPB-201ENST00000265619 TCRBV5S1A1TA0A578 114 aa8.83□□□□□ -1
VAPB-201ENST00000265619 ZBBXA8MT70 800 aa8.83□□□□□ -1
VAPB-201ENST00000265619 G3V2L1 256 aa8.83□□□□□ -1
VAPB-201ENST00000265619 CD4P01730 458 aa8.83□□□□□ -1
VAPB-201ENST00000265619 TSHRP16473 764 aa8.83□□□□□ -1
VAPB-201ENST00000265619 ACO1P21399 889 aaKnown RBP8.83□□□□□ -1
VAPB-201ENST00000265619 OSBPP22059 807 aa8.83□□□□□ -1
VAPB-201ENST00000265619 GTF2E2P29084 291 aaKnown RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms