RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 SNX13Q9Y5W8 968 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 H3BMM5 538 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 B4GAT1O43505 415 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 SLC10A7Q0GE19 358 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 RBBP5Q15291 538 aaKnown RBP10.78□□□□□ -0.68
USP28-201ENST00000003302 ANKDD1AQ495B1 522 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 GPRC5AQ8NFJ5 357 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 MYLPFQ96A32 169 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 MROH8Q9H579 483 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 ALG9Q9H6U8 611 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 GALPQ9UBC7 116 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 SORCS3Q9UPU3 1222 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 CLPTM1O96005 669 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 CCDC166P0CW27 439 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 YAP1P46937 504 aaKnown RBP10.78□□□□□ -0.68
USP28-201ENST00000003302 PTK2BQ14289 1009 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 TBCCQ15814 346 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 ALFQ53S48 1182 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 CD300LGQ6UXG3 332 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 EPHX4Q8IUS5 362 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 PDCD6IPQ8WUM4 868 aaKnown RBP10.78□□□□□ -0.68
USP28-201ENST00000003302 TINF2Q9BSI4 451 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 MRPL1Q9BYD6 325 aaKnown RBP10.78□□□□□ -0.68
USP28-201ENST00000003302 POLR3BQ9NW08 1133 aaPredicted RBP10.78□□□□□ -0.68
USP28-201ENST00000003302 PRAMEP78395 509 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 LRP8Q14114 963 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 ANKRD34AQ69YU3 496 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 DUS1LQ6P1R4 473 aaKnown RBP10.78□□□□□ -0.68
USP28-201ENST00000003302 ST13P4Q8IZP2 240 aaPredicted RBP10.78□□□□□ -0.68
USP28-201ENST00000003302 RYBPQ8N488 228 aaPredicted RBP10.78□□□□□ -0.68
USP28-201ENST00000003302 MARVELD2Q8N4S9 558 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 RNF34Q969K3 372 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 ERLEC1Q96DZ1 483 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 KIFC1Q9BW19 673 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 DUS2Q9NX74 493 aaKnown RBP10.78□□□□□ -0.68
USP28-201ENST00000003302 TLK1Q9UKI8 766 aa10.78□□□□□ -0.68
USP28-201ENST00000003302 MAGED1Q9Y5V3 778 aaPredicted RBP10.78□□□□□ -0.68
USP28-201ENST00000003302 ASB14A6NK59 587 aa10.77□□□□□ -0.68
USP28-201ENST00000003302 SCAMP3O14828 347 aaKnown RBP10.77□□□□□ -0.68
USP28-201ENST00000003302 MUSKO15146 869 aa10.77□□□□□ -0.68
USP28-201ENST00000003302 TFPTP0C1Z6 253 aa10.77□□□□□ -0.68
USP28-201ENST00000003302 PIM1P11309 404 aaPredicted RBP10.77□□□□□ -0.68
USP28-201ENST00000003302 RAB10P61026 200 aa10.77□□□□□ -0.68
USP28-201ENST00000003302 SH3BP2P78314 561 aa10.77□□□□□ -0.68
USP28-201ENST00000003302 DCAF4L1Q3SXM0 396 aa10.77□□□□□ -0.68
USP28-201ENST00000003302 AGMOQ6ZNB7 445 aa10.77□□□□□ -0.68
USP28-201ENST00000003302 CNDP1Q96KN2 507 aa10.77□□□□□ -0.68
USP28-201ENST00000003302 TUBB1Q9H4B7 451 aa10.77□□□□□ -0.68
USP28-201ENST00000003302 DMAP1Q9NPF5 467 aaPredicted RBP10.77□□□□□ -0.68
USP28-201ENST00000003302 BTRCQ9Y297 605 aa10.77□□□□□ -0.68
USP28-201ENST00000003302 CXCL11O14625 94 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 PAGE1O75459 146 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 F2P00734 622 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 MTHFD1P11586 935 aaKnown RBP10.77□□□□□ -0.69
USP28-201ENST00000003302 CDKN1CP49918 316 aaPredicted RBP10.77□□□□□ -0.69
USP28-201ENST00000003302 DSC2Q02487 901 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 TNK2Q07912 1038 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 PDAP1Q13442 181 aaKnown RBP10.77□□□□□ -0.69
USP28-201ENST00000003302 XKR4Q5GH76 650 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 SLC2A11Q9BYW1 496 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 NAA50Q9GZZ1 169 aaKnown RBP10.77□□□□□ -0.69
USP28-201ENST00000003302 OLAHQ9NV23 265 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 MAP10Q9P2G4 905 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 EPS15L1Q9UBC2 864 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 ACOT9Q9Y305 439 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 PATJQ8NI35 1801 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 MBLAC1A4D2B0 266 aaPredicted RBP10.77□□□□□ -0.69
USP28-201ENST00000003302 AXIN1O15169 862 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 TADA2AO75478 443 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 BCAS2O75934 225 aaPredicted RBP10.77□□□□□ -0.69
USP28-201ENST00000003302 DDHD2O94830 711 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 NCK1P16333 377 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 SLC7A2P52569 658 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 VPS26BQ4G0F5 336 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 PKN3Q6P5Z2 889 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 OFCC1Q8IZS5 231 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 RBM22Q9NW64 420 aaKnown RBP eCLIP10.77□□□□□ -0.69
USP28-201ENST00000003302 HCSTQ9UBK5 93 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 STAP1Q9ULZ2 295 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 CDYLQ9Y232 598 aa10.77□□□□□ -0.69
USP28-201ENST00000003302 FNDC3AQ9Y2H6 1198 aaKnown RBP10.77□□□□□ -0.69
USP28-201ENST00000003302 SAC3D1A6NKF1 404 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 SEC24DO94855 1032 aaPredicted RBP10.76□□□□□ -0.69
USP28-201ENST00000003302 PEX11BO96011 259 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 CDK4P11802 303 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 ME2P23368 584 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 RANBP1P43487 201 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 PSME3P61289 254 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 CDH17Q12864 832 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 PPIL2Q13356 520 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 ART3Q13508 389 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 RAB41Q5JT25 222 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 REP15Q6BDI9 236 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 ZNF410Q86VK4 478 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 SLC16A10Q8TF71 515 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 FCRL2Q96LA5 508 aaPredicted RBP10.76□□□□□ -0.69
USP28-201ENST00000003302 LRGUKQ96M69 825 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 IL22Q9GZX6 179 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 FBXO5Q9UKT4 447 aa10.76□□□□□ -0.69
USP28-201ENST00000003302 CHD9Q3L8U1 2897 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms