RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 HPCAL4Q9UM19 191 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 DOLKQ9UPQ8 538 aa19.67■□□□□ 0.74
CLN3-262ENST00000637699 TM7SF2O76062 418 aa19.66■□□□□ 0.74
CLN3-262ENST00000637699 GSRP00390 522 aa19.66■□□□□ 0.74
CLN3-262ENST00000637699 ITGA2BP08514 1039 aa19.66■□□□□ 0.74
CLN3-262ENST00000637699 MLLT3P42568 568 aaPredicted RBP19.66■□□□□ 0.74
CLN3-262ENST00000637699 GEMIN4P57678 1058 aaKnown RBP19.66■□□□□ 0.74
CLN3-262ENST00000637699 CDO1Q16878 200 aa19.66■□□□□ 0.74
CLN3-262ENST00000637699 ARL13BQ3SXY8 428 aa19.66■□□□□ 0.74
CLN3-262ENST00000637699 GDPD4Q6W3E5 623 aa19.66■□□□□ 0.74
CLN3-262ENST00000637699 MACC1Q6ZN28 852 aa19.66■□□□□ 0.74
CLN3-262ENST00000637699 B3GNT8Q7Z7M8 397 aa19.66■□□□□ 0.74
CLN3-262ENST00000637699 CPA5Q8WXQ8 436 aa19.66■□□□□ 0.74
CLN3-262ENST00000637699 TBATAQ96M53 351 aa19.66■□□□□ 0.74
CLN3-262ENST00000637699 WRAP53Q9BUR4 548 aaKnown RBP19.66■□□□□ 0.74
CLN3-262ENST00000637699 OSBPL1AQ9BXW6 950 aa19.66■□□□□ 0.74
CLN3-262ENST00000637699 MAGEB5Q9BZ81 275 aa19.66■□□□□ 0.74
CLN3-262ENST00000637699 EPB41L5Q9HCM4 733 aa19.66■□□□□ 0.74
CLN3-262ENST00000637699 HECTD1Q9ULT8 2610 aa19.65■□□□□ 0.74
CLN3-262ENST00000637699 CXorf51AA0A1B0GTR3 108 aa19.65■□□□□ 0.74
CLN3-262ENST00000637699 NTN3O00634 580 aaPredicted RBP19.65■□□□□ 0.74
CLN3-262ENST00000637699 EFSO43281 561 aa19.65■□□□□ 0.74
CLN3-262ENST00000637699 ADRA1BP35368 520 aa19.65■□□□□ 0.74
CLN3-262ENST00000637699 MAPKAPK2P49137 400 aa19.65■□□□□ 0.74
CLN3-262ENST00000637699 KLHL40Q2TBA0 621 aa19.65■□□□□ 0.74
CLN3-262ENST00000637699 PRICKLE2Q7Z3G6 844 aa19.65■□□□□ 0.74
CLN3-262ENST00000637699 NLRP14Q86W24 1093 aa19.65■□□□□ 0.74
CLN3-262ENST00000637699 JAMLQ86YT9 394 aa19.65■□□□□ 0.74
CLN3-262ENST00000637699 NETO2Q8NC67 525 aa19.65■□□□□ 0.74
CLN3-262ENST00000637699 CXorf40AQ8TE69 158 aa19.65■□□□□ 0.74
CLN3-262ENST00000637699 EPAS1Q99814 870 aa19.65■□□□□ 0.74
CLN3-262ENST00000637699 C1QTNF7Q9BXJ2 289 aa19.65■□□□□ 0.74
CLN3-262ENST00000637699 METTL5Q9NRN9 209 aaKnown RBP19.65■□□□□ 0.74
CLN3-262ENST00000637699 RABGEF1Q9UJ41 708 aa19.65■□□□□ 0.74
CLN3-262ENST00000637699 BOD1L1Q8NFC6 3051 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 FAM72CH0Y354 149 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 PLD2O14939 933 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 RHOQP17081 205 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 SLC5A2P31639 672 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 CCL7P80098 99 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 CAMK4Q16566 473 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 MAN2A1Q16706 1144 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 TPD52L1Q16890 204 aaPredicted RBP19.64■□□□□ 0.73
CLN3-262ENST00000637699 C15orf59Q2T9L4 293 aaPredicted RBP19.64■□□□□ 0.73
CLN3-262ENST00000637699 FAM72AQ5TYM5 149 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 MANEALQ5VSG8 457 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 NAA35Q5VZE5 725 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 FAM72DQ6L9T8 149 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 DPY19L2P1Q6NXN4 242 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 RAB11FIP2Q7L804 512 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 RD3Q7Z3Z2 195 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 PHLDB2Q86SQ0 1253 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 NOP9Q86U38 636 aaKnown RBP19.64■□□□□ 0.73
CLN3-262ENST00000637699 FAM72BQ86X60 149 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 ZNF354CQ86Y25 554 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 HID1Q8IV36 788 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 FBXO39Q8N4B4 442 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 ARL10Q8N8L6 244 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 TP53I13Q8NBR0 393 aaPredicted RBP19.64■□□□□ 0.73
CLN3-262ENST00000637699 MSANTD4Q8NCY6 345 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 PCDH19Q8TAB3 1148 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 SCG3Q8WXD2 468 aaKnown RBP19.64■□□□□ 0.73
CLN3-262ENST00000637699 TSACCQ96A04 125 aaPredicted RBP19.64■□□□□ 0.73
CLN3-262ENST00000637699 CCDC74AQ96AQ1 378 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 LIN37Q96GY3 246 aaPredicted RBP19.64■□□□□ 0.73
CLN3-262ENST00000637699 GFM1Q96RP9 751 aaKnown RBP19.64■□□□□ 0.73
CLN3-262ENST00000637699 FOXP3Q9BZS1 431 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 MAGEH1Q9H213 219 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 NDST4Q9H3R1 872 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 TMEM248Q9NWD8 314 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 KIAA1468Q9P260 1216 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 ATXN7L1Q9ULK2 861 aaPredicted RBP19.64■□□□□ 0.73
CLN3-262ENST00000637699 FHOD1Q9Y613 1164 aa19.64■□□□□ 0.73
CLN3-262ENST00000637699 BUB1O43683 1085 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 RAMP2O60895 175 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 WISP1O95388 367 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 LSM8O95777 96 aaKnown RBP19.63■□□□□ 0.73
CLN3-262ENST00000637699 MMEP08473 750 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 CTSEP14091 401 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 TIMP2P16035 220 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 UGT1A5P35504 534 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 BLKP51451 505 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 NFATC3Q12968 1075 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 IRF4Q15306 451 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 ELOCQ15369 112 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 TGIF1Q15583 401 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 ARCQ7LC44 396 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 SDR16C5Q8N3Y7 309 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 FSTL5Q8N475 847 aaPredicted RBP19.63■□□□□ 0.73
CLN3-262ENST00000637699 EXD3Q8N9H8 876 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 KYQ8NBH2 561 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 RXFP2Q8WXD0 754 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 GDAP1L1Q96MZ0 367 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 COQ6Q9Y2Z9 468 aa19.63■□□□□ 0.73
CLN3-262ENST00000637699 TOR1BO14657 336 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 KDELR3O43731 214 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 TMCC1O94876 653 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 LRIG2O94898 1065 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 GJB6O95452 261 aa19.62■□□□□ 0.73
CLN3-262ENST00000637699 RPLP0P05388 317 aaKnown RBP19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms