RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 ARL13BQ3SXY8 428 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 TMEM52BQ4KMG9 183 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 TAF1BQ53T94 588 aaPredicted RBP16.65■□□□□ 0.26
CLN3-255ENST00000637100 GDPD4Q6W3E5 623 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 CREBRFQ8IUR6 639 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 FAM114A1Q8IWE2 563 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 EMC1Q8N766 993 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 MSANTD4Q8NCY6 345 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 GLMNQ92990 594 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 NTAN1Q96AB6 310 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 MED8Q96G25 268 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 KLHL32Q96NJ5 620 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 MAGEB5Q9BZ81 275 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 CPEB1Q9BZB8 566 aaKnown RBP16.65■□□□□ 0.26
CLN3-255ENST00000637100 TTYH3Q9C0H2 523 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 PDCL3Q9H2J4 239 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 MBNL1Q9NR56 388 aaKnown RBP16.65■□□□□ 0.26
CLN3-255ENST00000637100 PCDHGA7Q9Y5G6 932 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 MYO18BQ8IUG5 2567 aa16.65■□□□□ 0.26
CLN3-255ENST00000637100 CCDC187A0A096LP49 1063 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 PMS2P1A4D2B8 440 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 GOLGA8SH3BPF8 625 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 CASC3O15234 703 aaKnown RBP16.64■□□□□ 0.25
CLN3-255ENST00000637100 EFSO43281 561 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 UGT2B4P06133 528 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 ITGA2BP08514 1039 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 TIMP2P16035 220 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 TSHRP16473 764 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 THOP1P52888 689 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 ADKP55263 362 aaKnown RBP16.64■□□□□ 0.25
CLN3-255ENST00000637100 CLN3Q13286 438 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 POLD3Q15054 466 aaPredicted RBP16.64■□□□□ 0.25
CLN3-255ENST00000637100 PRRT3Q5FWE3 981 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 FSTL5Q8N475 847 aaPredicted RBP16.64■□□□□ 0.25
CLN3-255ENST00000637100 ARL14Q8N4G2 192 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 OR6K2Q8NGY2 324 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 RXFP2Q8WXD0 754 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 CPA5Q8WXQ8 436 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 CCDC3Q9BQI4 270 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 PADI4Q9UM07 663 aa16.64■□□□□ 0.25
CLN3-255ENST00000637100 PIEZO2Q9H5I5 2752 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 TSPAN11A1L157 253 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 TMEM110-MUSTN1A8MSY1 372 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 WASH4PA8MWX3 477 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 KRIT1O00522 736 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 MUSKO15146 869 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 MMP20O60882 483 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 RAMP2O60895 175 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 TM7SF2O76062 418 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 ANXA6P08133 673 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 PLEKP08567 350 aaPredicted RBP16.63■□□□□ 0.25
CLN3-255ENST00000637100 CHRNB2P17787 502 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 EIF4A3P38919 411 aaKnown RBP16.63■□□□□ 0.25
CLN3-255ENST00000637100 HDAC4P56524 1084 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 ATP11AP98196 1134 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 C1orf61Q13536 156 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 RAPGEF1Q13905 1077 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 CAMK4Q16566 473 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 C15orf59Q2T9L4 293 aaPredicted RBP16.63■□□□□ 0.25
CLN3-255ENST00000637100 TAF3Q5VWG9 929 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 NAA35Q5VZE5 725 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 TTC7BQ86TV6 843 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 TBC1D31Q96DN5 1066 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 SLC13A1Q9BZW2 595 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 METTL5Q9NRN9 209 aaKnown RBP16.63■□□□□ 0.25
CLN3-255ENST00000637100 DNAI1Q9UI46 699 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 HPCAL4Q9UM19 191 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 NAV2Q8IVL1 2488 aa16.63■□□□□ 0.25
CLN3-255ENST00000637100 NEMP1O14524 444 aa16.62■□□□□ 0.25
CLN3-255ENST00000637100 UNGP13051 313 aaPredicted RBP16.62■□□□□ 0.25
CLN3-255ENST00000637100 BLKP51451 505 aa16.62■□□□□ 0.25
CLN3-255ENST00000637100 HK3P52790 923 aa16.62■□□□□ 0.25
CLN3-255ENST00000637100 YBEYP58557 167 aaPredicted RBP16.62■□□□□ 0.25
CLN3-255ENST00000637100 UBE2HP62256 183 aa16.62■□□□□ 0.25
CLN3-255ENST00000637100 FMO1Q01740 532 aa16.62■□□□□ 0.25
CLN3-255ENST00000637100 CDR2Q01850 454 aa16.62■□□□□ 0.25
CLN3-255ENST00000637100 PPARDQ03181 441 aa16.62■□□□□ 0.25
CLN3-255ENST00000637100 EIF3IQ13347 325 aaKnown RBP16.62■□□□□ 0.25
CLN3-255ENST00000637100 LY6DQ14210 128 aa16.62■□□□□ 0.25
CLN3-255ENST00000637100 KIF26BQ2KJY2 2108 aa16.62■□□□□ 0.25
CLN3-255ENST00000637100 ATXN7L2Q5T6C5 722 aaPredicted RBP16.62■□□□□ 0.25
CLN3-255ENST00000637100 XKR5Q6UX68 686 aa16.62■□□□□ 0.25
CLN3-255ENST00000637100 JOSD2Q8TAC2 188 aa16.62■□□□□ 0.25
CLN3-255ENST00000637100 GDAP1L1Q96MZ0 367 aa16.62■□□□□ 0.25
CLN3-255ENST00000637100 EPAS1Q99814 870 aa16.62■□□□□ 0.25
CLN3-255ENST00000637100 C1QTNF7Q9BXJ2 289 aa16.62■□□□□ 0.25
CLN3-255ENST00000637100 GANQ9H2C0 597 aa16.62■□□□□ 0.25
CLN3-255ENST00000637100 ATXN7L1Q9ULK2 861 aaPredicted RBP16.62■□□□□ 0.25
CLN3-255ENST00000637100 NOBOXO60393 691 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 TMCC1O94876 653 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 TNFSF15O95150 251 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 ITIH2P19823 946 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 SDC4P31431 198 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 CCKBRP32239 447 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 ELOCQ15369 112 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 KLHL40Q2TBA0 621 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 WSCD2Q2TBF2 565 aa16.61■□□□□ 0.25
CLN3-255ENST00000637100 CT47A1Q5JQC4 288 aaPredicted RBP16.61■□□□□ 0.25
CLN3-255ENST00000637100 ESRP1Q6NXG1 681 aaKnown RBP16.61■□□□□ 0.25
CLN3-255ENST00000637100 OGFOD3Q6PK18 319 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms