RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ZDHHC5Q9C0B5 715 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 SUV39H2Q9H5I1 410 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 DMTF1Q9Y222 760 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 PCDHA3Q9Y5H8 950 aa20.95■□□□□ 0.94
CLN3-240ENST00000631023 CCDC66A2RUB6 948 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 NEMP1O14524 444 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 MATN3O15232 486 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 TSPAN6O43657 245 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 KRT86O43790 486 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 GDF9O60383 454 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 NEBLO76041 1014 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 PIGNO95427 931 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 ENGP17813 658 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 XPAP23025 273 aaPredicted RBP20.94■□□□□ 0.94
CLN3-240ENST00000631023 CTNNA1P35221 906 aaKnown RBP20.94■□□□□ 0.94
CLN3-240ENST00000631023 RGRP47804 291 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 SUOXP51687 545 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 LIMK1P53667 647 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 AP1S1P61966 158 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 BCL2L1Q07817 233 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 SLC10A2Q12908 348 aaPredicted RBP20.94■□□□□ 0.94
CLN3-240ENST00000631023 SETMARQ53H47 684 aaPredicted RBP20.94■□□□□ 0.94
CLN3-240ENST00000631023 ZSCAN30Q86W11 494 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 HORMAD1Q86X24 394 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 LRRC57Q8N9N7 239 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 VOPP1Q96AW1 172 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 TM9SF3Q9HD45 589 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 RXFP3Q9NSD7 469 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 TRIM10Q9UDY6 481 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 AMFRQ9UKV5 643 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 FADS3Q9Y5Q0 445 aa20.94■□□□□ 0.94
CLN3-240ENST00000631023 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.93■□□□□ 0.94
CLN3-240ENST00000631023 A0A1W2PQU0 124 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 GRID2IPA4D2P6 1211 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 ARHGAP33O14559 1287 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 MAT2AP31153 395 aaKnown RBP20.93■□□□□ 0.94
CLN3-240ENST00000631023 CETN2P41208 172 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 NR2C2P49116 596 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 COPS2P61201 443 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 DYNLT1P63172 113 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 RPS21P63220 83 aaKnown RBP20.93■□□□□ 0.94
CLN3-240ENST00000631023 RACK1P63244 317 aaKnown RBP20.93■□□□□ 0.94
CLN3-240ENST00000631023 PDK1Q15118 436 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 RSPO4Q2I0M5 234 aaPredicted RBP20.93■□□□□ 0.94
CLN3-240ENST00000631023 RALGPS1Q5JS13 557 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 STPG1Q5TH74 334 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 BRAT1Q6PJG6 821 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 ADAT2Q7Z6V5 191 aaKnown RBP20.93■□□□□ 0.94
CLN3-240ENST00000631023 TEX26Q8N6G2 289 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 PAF1Q8N7H5 531 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 MAML1Q92585 1016 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 KRT35Q92764 455 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 SKA1Q96BD8 255 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 SERAC1Q96JX3 654 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 NUDCD1Q96RS6 583 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 MGME1Q9BQP7 344 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 ORAI3Q9BRQ5 295 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 TMEM9BQ9NQ34 198 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 SCUBE2Q9NQ36 999 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 LRRK1Q38SD2 2015 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 CNOT1A5YKK6 2376 aaKnown RBP20.93■□□□□ 0.94
CLN3-240ENST00000631023 TMEM131Q92545 1883 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 PPP1R12AO14974 1030 aaPredicted RBP20.93■□□□□ 0.94
CLN3-240ENST00000631023 MUSKO15146 869 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 CST8O60676 142 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 CTNNA2P26232 953 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 GRIA4P48058 902 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 MARCKSL1P49006 195 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 KAZNQ674X7 775 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 KIAA1161Q6NSJ0 714 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 PEX26Q7Z412 305 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 CAMK1DQ8IU85 385 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 CCDC13Q8IYE1 715 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 BRD8Q9H0E9 1235 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 EBF2Q9HAK2 575 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 AASDHPPTQ9NRN7 309 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 AMACRQ9UHK6 382 aa20.93■□□□□ 0.94
CLN3-240ENST00000631023 CCDC175P0C221 793 aa20.92■□□□□ 0.94
CLN3-240ENST00000631023 KRT10P13645 584 aa20.92■□□□□ 0.94
CLN3-240ENST00000631023 CCNB1P14635 433 aa20.92■□□□□ 0.94
CLN3-240ENST00000631023 CES1P23141 567 aa20.92■□□□□ 0.94
CLN3-240ENST00000631023 CSNK1EP49674 416 aaKnown RBP20.92■□□□□ 0.94
CLN3-240ENST00000631023 RWDD2BP57060 319 aa20.92■□□□□ 0.94
CLN3-240ENST00000631023 POLR2LP62875 67 aaKnown RBP20.92■□□□□ 0.94
CLN3-240ENST00000631023 PPIDQ08752 370 aaKnown RBP20.92■□□□□ 0.94
CLN3-240ENST00000631023 SLC45A4Q5BKX6 768 aa20.92■□□□□ 0.94
CLN3-240ENST00000631023 NT5DC3Q86UY8 548 aa20.92■□□□□ 0.94
CLN3-240ENST00000631023 PGBD5Q8N414 524 aa20.92■□□□□ 0.94
CLN3-240ENST00000631023 GTPBP2Q9BX10 602 aaKnown RBP20.92■□□□□ 0.94
CLN3-240ENST00000631023 NT5MQ9NPB1 228 aa20.92■□□□□ 0.94
CLN3-240ENST00000631023 RBM22Q9NW64 420 aaKnown RBP eCLIP20.92■□□□□ 0.94
CLN3-240ENST00000631023 A0A0U1RQJ8 604 aa20.91■□□□□ 0.94
CLN3-240ENST00000631023 PRAMEF26H0Y7S4 382 aa20.91■□□□□ 0.94
CLN3-240ENST00000631023 TIMP2P16035 220 aa20.91■□□□□ 0.94
CLN3-240ENST00000631023 CR2P20023 1033 aa20.91■□□□□ 0.94
CLN3-240ENST00000631023 TGM2P21980 687 aa20.91■□□□□ 0.94
CLN3-240ENST00000631023 ABL2P42684 1182 aa20.91■□□□□ 0.94
CLN3-240ENST00000631023 ITKQ08881 620 aa20.91■□□□□ 0.94
CLN3-240ENST00000631023 ELP6Q0PNE2 266 aa20.91■□□□□ 0.94
CLN3-240ENST00000631023 PPP2R5EQ16537 467 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms