RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 MEI1Q5TIA1 1274 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP18.31■□□□□ 0.52
CLN3-239ENST00000628023 RABEPKQ7Z6M1 372 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 OR14C36Q8NHC7 312 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 CEP76Q8TAP6 659 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 BRD8Q9H0E9 1235 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 NEUROG2Q9H2A3 272 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 NT5MQ9NPB1 228 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 SCUBE2Q9NQ36 999 aa18.31■□□□□ 0.52
CLN3-239ENST00000628023 APOC4-APOC2K7ER74 178 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 KCNK1O00180 336 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 MUSKO15146 869 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 INSIG1O15503 277 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 KIF5CO60282 957 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 PIGNO95427 931 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 APOC2P02655 101 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 CEACAM1P13688 526 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 CCNB1P14635 433 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 ITGB7P26010 798 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 MSNP26038 577 aaKnown RBP18.3■□□□□ 0.52
CLN3-239ENST00000628023 DRD3P35462 400 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 MAPK8P45983 427 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 RGRP47804 291 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 ATXN3P54252 364 aaPredicted RBP18.3■□□□□ 0.52
CLN3-239ENST00000628023 MAXP61244 160 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 DCAF12L1Q5VU92 463 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 GDPD4Q6W3E5 623 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 ERN2Q76MJ5 926 aaKnown RBP18.3■□□□□ 0.52
CLN3-239ENST00000628023 SRLQ86TD4 932 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 ZC3H18Q86VM9 953 aaKnown RBP18.3■□□□□ 0.52
CLN3-239ENST00000628023 REXO1L1PQ8IX06 675 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 TFB1MQ8WVM0 346 aaKnown RBP18.3■□□□□ 0.52
CLN3-239ENST00000628023 FATE1Q969F0 183 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 ARRDC3Q96B67 414 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 HSPA12BQ96MM6 686 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 KLHL32Q96NJ5 620 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 MGME1Q9BQP7 344 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 POLR1EQ9GZS1 481 aaKnown RBP18.3■□□□□ 0.52
CLN3-239ENST00000628023 ATP13A3Q9H7F0 1226 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 RBM22Q9NW64 420 aaKnown RBP eCLIP18.3■□□□□ 0.52
CLN3-239ENST00000628023 PYCARDQ9ULZ3 195 aa18.3■□□□□ 0.52
CLN3-239ENST00000628023 MAP1BP46821 2468 aaKnown RBP18.29■□□□□ 0.52
CLN3-239ENST00000628023 LRRC72A6NJI9 287 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 CDX4O14627 284 aaPredicted RBP18.29■□□□□ 0.52
CLN3-239ENST00000628023 KCNK3O14649 394 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 SLC7A4O43246 635 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 CFIP05156 583 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 CSRP1P21291 193 aaKnown RBP18.29■□□□□ 0.52
CLN3-239ENST00000628023 SERPINA4P29622 427 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 CSNK1DP48730 415 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 NEK3P51956 506 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 ADPRHP54922 357 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 AP1S1P61966 158 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 ZNF33AQ06730 810 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 NSUN2Q08J23 767 aaKnown RBP eCLIP18.29■□□□□ 0.52
CLN3-239ENST00000628023 DUOXA1Q1HG43 343 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 ZNF805Q5CZA5 627 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 FBXL19Q6PCT2 694 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 SLC23A3Q6PIS1 610 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 B4GALNT4Q76KP1 1039 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 SNX19Q92543 992 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 MAML1Q92585 1016 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 FOXJ1Q92949 421 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 TUBGCP5Q96RT8 1024 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 HERPUD2Q9BSE4 406 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 HDAC8Q9BY41 377 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 SLC32A1Q9H598 525 aa18.29■□□□□ 0.52
CLN3-239ENST00000628023 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.29■□□□□ 0.52
CLN3-239ENST00000628023 H7C0C1 242 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 RNF103O00237 685 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 JCHAINP01591 159 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 XPAP23025 273 aaPredicted RBP18.28■□□□□ 0.52
CLN3-239ENST00000628023 ITPKAP23677 461 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 ATP5OP48047 213 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 OTUD4Q01804 1114 aaKnown RBP18.28■□□□□ 0.52
CLN3-239ENST00000628023 BCL2L1Q07817 233 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 NOMO1Q15155 1222 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 ZNF569Q5MCW4 686 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 SYCP2LQ5T4T6 812 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 PIP5KL1Q5T9C9 394 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 AGBL4Q5VU57 503 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 NCEH1Q6PIU2 408 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 PGBD5Q8N414 524 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.28■□□□□ 0.52
CLN3-239ENST00000628023 TEX26Q8N6G2 289 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 OR2T34Q8NGX1 318 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 ACTL9Q8TC94 416 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 NUDCD1Q96RS6 583 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 FERMT1Q9BQL6 677 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 CPEB1Q9BZB8 566 aaKnown RBP18.28■□□□□ 0.52
CLN3-239ENST00000628023 TMEM74BQ9NUR3 256 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 PILRBQ9UKJ0 227 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 SLC6A14Q9UN76 642 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 PI4KAP42356 2102 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 NUMA1Q14980 2115 aa18.28■□□□□ 0.52
CLN3-239ENST00000628023 TBC1D3DA0A087WVF3 549 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 TBC1D3IA0A087WXS9 549 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 TBC1D3EA0A087X179 549 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 TBC1D3KA0A087X1G2 549 aa18.27■□□□□ 0.52
CLN3-239ENST00000628023 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms