RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 CAMK1DQ8IU85 385 aa20.52■□□□□ 0.88
PTCD3-220ENST00000627371 ACTL9Q8TC94 416 aa20.52■□□□□ 0.88
PTCD3-220ENST00000627371 RUBCNQ92622 972 aa20.52■□□□□ 0.88
PTCD3-220ENST00000627371 RAB7BQ96AH8 199 aa20.52■□□□□ 0.88
PTCD3-220ENST00000627371 NSMCE3Q96MG7 304 aa20.52■□□□□ 0.88
PTCD3-220ENST00000627371 QKIQ96PU8 341 aaKnown RBP eCLIP20.52■□□□□ 0.88
PTCD3-220ENST00000627371 TLR10Q9BXR5 811 aa20.52■□□□□ 0.88
PTCD3-220ENST00000627371 PREBQ9HCU5 417 aa20.52■□□□□ 0.88
PTCD3-220ENST00000627371 ZBTB32Q9Y2Y4 487 aaPredicted RBP20.52■□□□□ 0.88
PTCD3-220ENST00000627371 LRRK1Q38SD2 2015 aa20.52■□□□□ 0.88
PTCD3-220ENST00000627371 WDR87Q6ZQQ6 2873 aa20.51■□□□□ 0.87
PTCD3-220ENST00000627371 TTC24A2A3L6 582 aaPredicted RBP20.51■□□□□ 0.87
PTCD3-220ENST00000627371 GOLGA6L9A6NEM1 432 aa20.51■□□□□ 0.87
PTCD3-220ENST00000627371 JCHAINP01591 159 aa20.51■□□□□ 0.87
PTCD3-220ENST00000627371 ITPKAP23677 461 aa20.51■□□□□ 0.87
PTCD3-220ENST00000627371 DPP6P42658 865 aa20.51■□□□□ 0.87
PTCD3-220ENST00000627371 WDR45BQ5MNZ6 344 aa20.51■□□□□ 0.87
PTCD3-220ENST00000627371 SYCP2LQ5T4T6 812 aa20.51■□□□□ 0.87
PTCD3-220ENST00000627371 B4GALNT4Q76KP1 1039 aa20.51■□□□□ 0.87
PTCD3-220ENST00000627371 BIRC7Q96CA5 298 aa20.51■□□□□ 0.87
PTCD3-220ENST00000627371 ECHDC3Q96DC8 303 aa20.51■□□□□ 0.87
PTCD3-220ENST00000627371 SEMA3CQ99985 751 aa20.51■□□□□ 0.87
PTCD3-220ENST00000627371 ARRDC1-AS1Q9H2J1 176 aa20.51■□□□□ 0.87
PTCD3-220ENST00000627371 NOD2Q9HC29 1040 aa20.51■□□□□ 0.87
PTCD3-220ENST00000627371 ATP8A1Q9Y2Q0 1164 aa20.51■□□□□ 0.87
PTCD3-220ENST00000627371 TTLL3Q9Y4R7 772 aa20.51■□□□□ 0.87
PTCD3-220ENST00000627371 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.51■□□□□ 0.87
PTCD3-220ENST00000627371 TBC1D3DA0A087WVF3 549 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 TBC1D3IA0A087WXS9 549 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 TBC1D3EA0A087X179 549 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 TBC1D3KA0A087X1G2 549 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 TBC1D3FA6NER0 549 aaPredicted RBP20.5■□□□□ 0.87
PTCD3-220ENST00000627371 USP27XA6NNY8 438 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 TBC1D3LB9A6J9 549 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 TRAFD1O14545 582 aaPredicted RBP20.5■□□□□ 0.87
PTCD3-220ENST00000627371 KCNK3O14649 394 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 MTSS1O43312 755 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 AP1G1O43747 822 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 SOCS5O75159 536 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 IGHV4-34P06331 123 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 TBC1D3HP0C7X1 549 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 CES1P23141 567 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 MPLP40238 635 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 ABL2P42684 1182 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 CCR5P51681 352 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 ITKQ08881 620 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 SLC45A4Q5BKX6 768 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 CFAP58Q5T655 872 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 PEAR1Q5VY43 1037 aaPredicted RBP20.5■□□□□ 0.87
PTCD3-220ENST00000627371 TBC1D3GQ6DHY5 549 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 TBC1D3CQ6IPX1 549 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 BRAT1Q6PJG6 821 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 SYT12Q8IV01 421 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 TBC1D3Q8IZP1 549 aaPredicted RBP20.5■□□□□ 0.87
PTCD3-220ENST00000627371 CNTD1Q8N815 330 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 TTC13Q8NBP0 860 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 DNASE2BQ8WZ79 361 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 HINFPQ9BQA5 517 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 SEPT10Q9P0V9 454 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 PILRBQ9UKJ0 227 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 TPX2Q9ULW0 747 aaKnown RBP20.5■□□□□ 0.87
PTCD3-220ENST00000627371 JRKLQ9Y4A0 524 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 FADS3Q9Y5Q0 445 aa20.5■□□□□ 0.87
PTCD3-220ENST00000627371 TP53BP1Q12888 1972 aaPredicted RBP20.5■□□□□ 0.87
PTCD3-220ENST00000627371 CACNA1EQ15878 2313 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 H7C0C1 242 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 HTRA2O43464 458 aaPredicted RBP20.49■□□□□ 0.87
PTCD3-220ENST00000627371 KIF5CO60282 957 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 LRP3O75074 770 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 FSBPO95073 299 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 PTPN3P26045 913 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 HOXD12P35452 270 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 ATP5OP48047 213 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 SUOXP51687 545 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 PPP2CBP62714 309 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 PPP2CAP67775 309 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 DSC2Q02487 901 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 TEX44Q53QW1 395 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 ZNF569Q5MCW4 686 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 PLA2G2CQ5R387 149 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 NEK5Q6P3R8 708 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 TRIM69Q86WT6 500 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 RGL4Q8IZJ4 473 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 SPOCK2Q92563 424 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 PIGKQ92643 395 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 CEP41Q9BYV8 373 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 ATXN2Q99700 1313 aaKnown RBP20.49■□□□□ 0.87
PTCD3-220ENST00000627371 PIEZO1Q92508 2521 aa20.49■□□□□ 0.87
PTCD3-220ENST00000627371 A0A1W2PQ67 120 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 SPINT1O43278 529 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 LATO43561 262 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 RBP3P10745 1247 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 TIMP2P16035 220 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 MSNP26038 577 aaKnown RBP20.48■□□□□ 0.87
PTCD3-220ENST00000627371 EIF3EP60228 445 aaKnown RBP20.48■□□□□ 0.87
PTCD3-220ENST00000627371 WASHC5Q12768 1159 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 TRAF2Q12933 501 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 UGP2Q16851 508 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 TTC7BQ86TV6 843 aa20.48■□□□□ 0.87
PTCD3-220ENST00000627371 ZSWIM9Q86XI8 627 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms