RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 LRIG2O94898 1065 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 UQCRHP07919 91 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 CD38P28907 300 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 L1CAMP32004 1257 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 CTSKP43235 329 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 SERPINH1P50454 418 aaKnown RBP12.85□□□□□ -0.35
PNKP-217ENST00000625216 CNTN1Q12860 1018 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 FOXC1Q12948 553 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 KRT81Q14533 505 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 DPYSL2Q16555 572 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 ZNF423Q2M1K9 1284 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 BOLA3Q53S33 107 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 SLC45A4Q5BKX6 768 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 TFDP3Q5H9I0 405 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 EFHC2Q5JST6 749 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 KAZNQ674X7 775 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 RWDD4Q6NW29 188 aaKnown RBP12.85□□□□□ -0.35
PNKP-217ENST00000625216 GLRX5Q86SX6 157 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 NLRP14Q86W24 1093 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 MMGT1Q8N4V1 131 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 PCDH20Q8N6Y1 951 aaKnown RBP12.85□□□□□ -0.35
PNKP-217ENST00000625216 PRELID2Q8N945 189 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 KCTD6Q8NC69 237 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 TSC1Q92574 1164 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 ISG20Q96AZ6 181 aaKnown RBP12.85□□□□□ -0.35
PNKP-217ENST00000625216 NAP1L3Q99457 506 aaPredicted RBP12.85□□□□□ -0.35
PNKP-217ENST00000625216 DHX35Q9H5Z1 703 aaKnown RBP12.85□□□□□ -0.35
PNKP-217ENST00000625216 EBF2Q9HAK2 575 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 IL21RQ9HBE5 538 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 PREBQ9HCU5 417 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 DYRK4Q9NR20 520 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 DONSONQ9NYP3 566 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 HPCAL4Q9UM19 191 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 WASF3Q9UPY6 502 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 FNDC3AQ9Y2H6 1198 aaKnown RBP12.85□□□□□ -0.35
PNKP-217ENST00000625216 R3HDM2Q9Y2K5 976 aaKnown RBP12.85□□□□□ -0.35
PNKP-217ENST00000625216 SLCO1B1Q9Y6L6 691 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 CEP192Q8TEP8 1941 aa12.85□□□□□ -0.35
PNKP-217ENST00000625216 SPAARA0A1B0GVQ0 90 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 PCNX2A6NKB5 2137 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 FAM72CH0Y354 149 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 CCDC188H7C350 402 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 FLRT2O43155 660 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 PCDHGA12O60330 932 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 MAGEC1O60732 1142 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 CBFA2T3O75081 653 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 OVGP1Q12889 678 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 PDK2Q15119 407 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 CYP1B1Q16678 543 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 ODF2Q5BJF6 829 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 FAM72AQ5TYM5 149 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 AGBL4Q5VU57 503 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 NAPEPLDQ6IQ20 393 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 FAM72DQ6L9T8 149 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 C22orf39Q6P5X5 142 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 LINGO4Q6UY18 593 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 IQCHQ86VS3 1027 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 TRIM69Q86WT6 500 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 FAM72BQ86X60 149 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 KLHL7Q8IXQ5 586 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 ARHGEF2Q92974 986 aaKnown RBP12.84□□□□□ -0.35
PNKP-217ENST00000625216 FAF2Q96CS3 445 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 PPP1R16AQ96I34 528 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 SERAC1Q96JX3 654 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 SLC6A18Q96N87 628 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 CDC6Q99741 560 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 ZNF670Q9BS34 389 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 CALN1Q9BXU9 219 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 DDX47Q9H0S4 455 aaKnown RBP12.84□□□□□ -0.35
PNKP-217ENST00000625216 AASDHPPTQ9NRN7 309 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 IL36AQ9UHA7 158 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 PCOLCE2Q9UKZ9 415 aa12.84□□□□□ -0.35
PNKP-217ENST00000625216 NUMA1Q14980 2115 aa12.83□□□□□ -0.35
PNKP-217ENST00000625216 A0A1W2PR77 199 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 ZSCAN5CA6NGD5 496 aaPredicted RBP12.83□□□□□ -0.36
PNKP-217ENST00000625216 ZNF487B1APH4 448 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 KPNA3O00505 521 aaPredicted RBP12.83□□□□□ -0.36
PNKP-217ENST00000625216 RAMP2O60895 175 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 RNGTTO60942 597 aaKnown RBP12.83□□□□□ -0.36
PNKP-217ENST00000625216 PHF2O75151 1096 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 ZNF821O75541 412 aaPredicted RBP12.83□□□□□ -0.36
PNKP-217ENST00000625216 CTSLP07711 333 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 GLDCP23378 1020 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 IL4RP24394 825 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 HTR7P34969 479 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 CETN2P41208 172 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 CCT8P50990 548 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 METAP1P53582 386 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 YBEYP58557 167 aaPredicted RBP12.83□□□□□ -0.36
PNKP-217ENST00000625216 MRPS25P82663 173 aaKnown RBP12.83□□□□□ -0.36
PNKP-217ENST00000625216 ARF5P84085 180 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 POLD3Q15054 466 aaPredicted RBP12.83□□□□□ -0.36
PNKP-217ENST00000625216 ERCC6LQ2NKX8 1250 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 INAVAQ3KP66 663 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 CARD16Q5EG05 197 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 ARSIQ5FYB1 569 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 PPP6R3Q5H9R7 873 aaPredicted RBP12.83□□□□□ -0.36
PNKP-217ENST00000625216 TTC27Q6P3X3 843 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 DPY19L3Q6ZPD9 716 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 BBS12Q6ZW61 710 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms