RNA–Protein interactions for RNA: ENST00000620864.1

COLCA1-205, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best) BASIC

Gene COLCA1, Length 8,098 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-205ENST00000620864 TMEM47Q9BQJ4 181 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 ACAT2Q9BWD1 397 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 RBM4Q9BWF3 364 aaKnown RBP7.23□□□□□ -1.25
COLCA1-205ENST00000620864 GDF3Q9NR23 364 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 CLIC5Q9NZA1 410 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 MARK1Q9P0L2 795 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 IFT80Q9P2H3 777 aaPredicted RBP7.23□□□□□ -1.25
COLCA1-205ENST00000620864 PNMA8BQ9ULN7 279 aaPredicted RBP7.23□□□□□ -1.25
COLCA1-205ENST00000620864 PPIEQ9UNP9 301 aaKnown RBP7.23□□□□□ -1.25
COLCA1-205ENST00000620864 TRIM64A6NGJ6 449 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 TRIM64BA6NI03 449 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 PPEF2O14830 753 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 SMAD1Q15797 465 aaKnown RBP7.23□□□□□ -1.25
COLCA1-205ENST00000620864 SNAP47Q5SQN1 464 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 RBM43Q6ZSC3 357 aaKnown RBP7.23□□□□□ -1.25
COLCA1-205ENST00000620864 INO80EQ8NBZ0 244 aaPredicted RBP7.23□□□□□ -1.25
COLCA1-205ENST00000620864 PHC3Q8NDX5 983 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 MCOLN3Q8TDD5 553 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 AGAP11Q8TF27 550 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 PTCD2Q8WV60 388 aaKnown RBP7.23□□□□□ -1.25
COLCA1-205ENST00000620864 VPS35Q96QK1 796 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 NECTIN3Q9NQS3 549 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 EXD2Q9NVH0 621 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 PRDM4Q9UKN5 801 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 AGAP1Q9UPQ3 857 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 PHLPP1O60346 1717 aa7.23□□□□□ -1.25
COLCA1-205ENST00000620864 PNPLA7Q6ZV29 1317 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 GLTPD2A6NH11 291 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 AMHP03971 560 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 PROCP04070 461 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 SYN1P17600 705 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 ILF3Q12906 894 aaKnown RBP eCLIP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 CRTC3Q6UUV7 619 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 CHST15Q7LFX5 561 aaPredicted RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 RD3Q7Z3Z2 195 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 TMEM17Q86X19 198 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 COLGALT2Q8IYK4 626 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 SHDQ96IW2 340 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 PRMT6Q96LA8 375 aaPredicted RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 WDCPQ9H6R7 721 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 TBC1D24Q9ULP9 559 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 SNX6Q9UNH7 406 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 SAMD4AQ9UPU9 718 aaKnown RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 TCHHQ07283 1943 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 SERPINB7O75635 380 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 B3GALNT1O75752 331 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 GJB1P08034 283 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 ZNF7P17097 686 aaPredicted RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 MCAMP43121 646 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 CLK3P49761 638 aaKnown RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 ZNF844Q08AG5 666 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 FAXCQ5TGI0 409 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 HLA-DQA1Q5Y7H0 255 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 ZCCHC9Q8N567 271 aaKnown RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 ZNF607Q96SK3 696 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 MRPS17Q9Y2R5 130 aaKnown RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 ALG5Q9Y673 324 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 DISP2A7MBM2 1401 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 ENTPD3O75355 529 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 URODP06132 367 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 CHKAP35790 457 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 NME5P56597 212 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 MRPS22P82650 360 aaKnown RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 E2F2Q14209 437 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 HERC3Q15034 1050 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 MTX3Q5HYI7 312 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 GPR107Q5VW38 600 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 SLFN11Q7Z7L1 901 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 MPP5Q8N3R9 675 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 SRBD1Q8N5C6 995 aaKnown RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 ZNF557Q8N988 423 aaPredicted RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 TCP10LQ8TDR4 215 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 DNAJA4Q8WW22 397 aaPredicted RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 SOCS4Q8WXH5 440 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 CD101Q93033 1021 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 AIFM3Q96NN9 605 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 XPNPEP3Q9NQH7 507 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 TBCCD1Q9NVR7 557 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 THG1LQ9NWX6 298 aaKnown RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 NDOR1Q9UHB4 597 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 SNX8Q9Y5X2 465 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 USP31Q70CQ4 1352 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 CDC42BPBQ9Y5S2 1711 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 A0A087X0T9 212 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 FAM25EA8MYX2 175 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 PDLIM1O00151 329 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 PDE2AO00408 941 aaPredicted RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 PCDH8O95206 1070 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 TOP3BO95985 862 aaKnown RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 IDO1P14902 403 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 C1QBPQ07021 282 aaKnown RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 IL18Q14116 193 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 ZNHIT3Q15649 155 aaPredicted RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 VMACQ2NL98 169 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 BBS4Q96RK4 519 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 IRX2Q9BZI1 471 aaPredicted RBP7.22□□□□□ -1.25
COLCA1-205ENST00000620864 AP4B1Q9Y6B7 739 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 PIGBOS1A0A0B4J2F0 54 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 KANTRA0A1W2PQU2 76 aa7.22□□□□□ -1.25
COLCA1-205ENST00000620864 DHRS12A0PJE2 317 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms