RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 PPIDQ08752 370 aaKnown RBP13.64□□□□□ -0.23
LINC00540-202ENST00000616974 ZNF235Q14590 738 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 ODF2Q5BJF6 829 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 PLA2G2CQ5R387 149 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 MEI1Q5TIA1 1274 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 TBC1D3GQ6DHY5 549 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 TBC1D3CQ6IPX1 549 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 GDPD4Q6W3E5 623 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 ERN2Q76MJ5 926 aaKnown RBP13.64□□□□□ -0.23
LINC00540-202ENST00000616974 RCOR2Q8IZ40 523 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 TBC1D3Q8IZP1 549 aaPredicted RBP13.64□□□□□ -0.23
LINC00540-202ENST00000616974 TEX26Q8N6G2 289 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 ACTL9Q8TC94 416 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 MAML1Q92585 1016 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 RUBCNQ92622 972 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 MGME1Q9BQP7 344 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 SEMA4GQ9NTN9 838 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 PILRBQ9UKJ0 227 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 RAB23Q9ULC3 237 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 COQ6Q9Y2Z9 468 aa13.64□□□□□ -0.23
LINC00540-202ENST00000616974 ZFHX4Q86UP3 3567 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 CCDC66A2RUB6 948 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 METTL12A8MUP2 240 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 ZNF487B1APH4 448 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 C1QTNF3-AMACRE9PGA6 284 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 MATN3O15232 486 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 RETP07949 1114 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 MMP2P08253 660 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 TIMP2P16035 220 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 ITGB7P26010 798 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 GEMIN4P57678 1058 aaKnown RBP13.63□□□□□ -0.23
LINC00540-202ENST00000616974 OTUD4Q01804 1114 aaKnown RBP13.63□□□□□ -0.23
LINC00540-202ENST00000616974 BNC1Q01954 994 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 IFI16Q16666 785 aaKnown RBP13.63□□□□□ -0.23
LINC00540-202ENST00000616974 ZNF805Q5CZA5 627 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 MARC1Q5VT66 337 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 NYAP1Q6ZVC0 841 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 BBS12Q6ZW61 710 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 CYP2U1Q7Z449 544 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 DSG4Q86SJ6 1040 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 CCDC13Q8IYE1 715 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 RNF10Q8N5U6 811 aaKnown RBP13.63□□□□□ -0.23
LINC00540-202ENST00000616974 ARRDC2Q8TBH0 407 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 ATG4AQ8WYN0 398 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 AGAP3Q96P47 875 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 TSGA13Q96PP4 275 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 SEMA3CQ99985 751 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 RBM22Q9NW64 420 aaKnown RBP eCLIP13.63□□□□□ -0.23
LINC00540-202ENST00000616974 SMARCAL1Q9NZC9 954 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 KCNK3O14649 394 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 ITKQ08881 620 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 WASHC5Q12768 1159 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 OLIG2Q13516 323 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 PRKD1Q15139 912 aaPredicted RBP13.63□□□□□ -0.23
LINC00540-202ENST00000616974 E2F5Q15329 346 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 PRAMEF14Q5SWL7 426 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 KDELC2Q7Z4H8 507 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 PDCD6IPQ8WUM4 868 aaKnown RBP13.63□□□□□ -0.23
LINC00540-202ENST00000616974 RBM41Q96IZ5 413 aaKnown RBP13.63□□□□□ -0.23
LINC00540-202ENST00000616974 SLC6A18Q96N87 628 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 SEPT3Q9UH03 358 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 FZD4Q9ULV1 537 aa13.63□□□□□ -0.23
LINC00540-202ENST00000616974 FARP1Q9Y4F1 1045 aaPredicted RBP13.63□□□□□ -0.23
LINC00540-202ENST00000616974 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.63□□□□□ -0.23
LINC00540-202ENST00000616974 LNP1A1A4G5 178 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 MEI4A8MW99 385 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 WNT1P04628 370 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 CCNCP24863 283 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 CD68P34810 354 aaPredicted RBP13.62□□□□□ -0.23
LINC00540-202ENST00000616974 CSNK1EP49674 416 aaKnown RBP13.62□□□□□ -0.23
LINC00540-202ENST00000616974 KLF1Q13351 362 aaPredicted RBP13.62□□□□□ -0.23
LINC00540-202ENST00000616974 PPP2R5EQ16537 467 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 FAM46CQ5VWP2 391 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 PRUNE1Q86TP1 453 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 VSIG1Q86XK7 387 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 SPATA22Q8NHS9 363 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 CASKIN2Q8WXE0 1202 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 CCDC114Q96M63 670 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 WRAP53Q9BUR4 548 aaKnown RBP13.62□□□□□ -0.23
LINC00540-202ENST00000616974 TSGA10Q9BZW7 698 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 SUV39H2Q9H5I1 410 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 DONSONQ9NYP3 566 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 UBP1Q9NZI7 540 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 NCKAP1Q9Y2A7 1128 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.62□□□□□ -0.23
LINC00540-202ENST00000616974 FADS3Q9Y5Q0 445 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 ARHGEF17Q96PE2 2063 aaPredicted RBP13.62□□□□□ -0.23
LINC00540-202ENST00000616974 SCN8AQ9UQD0 1980 aa13.62□□□□□ -0.23
LINC00540-202ENST00000616974 CXorf51AA0A1B0GTR3 108 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 A0A1W2PQU0 124 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 RAD51BO15315 384 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 SLC31A1O15431 190 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 RHOBTB1O94844 696 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 PCDH8O95206 1070 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 MT-CYBP00156 380 aaPredicted RBP13.61□□□□□ -0.23
LINC00540-202ENST00000616974 PTPN3P26045 913 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 RBL1P28749 1068 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 OXTRP30559 389 aa13.61□□□□□ -0.23
LINC00540-202ENST00000616974 HNRNPDQ14103 355 aaKnown RBP13.61□□□□□ -0.23
LINC00540-202ENST00000616974 TRIM61Q5EBN2 209 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms