RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 WASF2Q9Y6W5 498 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 U3KQA8 63 aa6.39□□□□□ -1.39
CUX1-220ENST00000607092 NYNRINQ9P2P1 1898 aaKnown RBP6.39□□□□□ -1.39
CUX1-220ENST00000607092 CREBBPQ92793 2442 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 IGLON5A6NGN9 336 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 D6RAR5 112 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 NTN3O00634 580 aaPredicted RBP6.38□□□□□ -1.39
CUX1-220ENST00000607092 YY2O15391 372 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 CAPN5O15484 640 aaPredicted RBP6.38□□□□□ -1.39
CUX1-220ENST00000607092 SMAD6O43541 496 aaKnown RBP6.38□□□□□ -1.39
CUX1-220ENST00000607092 SNAP91O60641 907 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 ZMPSTE24O75844 475 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 IGSF6O95976 241 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 RHOQP17081 205 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 DESP17661 470 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 NFKBIAP25963 317 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 UGT1A5P35504 534 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 HK3P52790 923 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 PMS1P54277 932 aaKnown RBP6.38□□□□□ -1.39
CUX1-220ENST00000607092 NRG1Q02297 640 aaPredicted RBP6.38□□□□□ -1.39
CUX1-220ENST00000607092 NFATC3Q12968 1075 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 TAF5Q15542 800 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 ARHGAP44Q17R89 818 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 INO80DQ53TQ3 878 aaPredicted RBP6.38□□□□□ -1.39
CUX1-220ENST00000607092 MANEAQ5SRI9 462 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 CFAP58Q5T655 872 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 KLHL10Q6JEL2 608 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 ERAP2Q6P179 960 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 TRIM65Q6PJ69 517 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 FAM183BPQ6ZVS7 135 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 PARS2Q7L3T8 475 aaKnown RBP6.38□□□□□ -1.39
CUX1-220ENST00000607092 TFAP2DQ7Z6R9 452 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 TTC7BQ86TV6 843 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 FAM114A1Q8IWE2 563 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 SLC35F3Q8IY50 421 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 CHST14Q8NCH0 376 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 KIAA1524Q8TCG1 905 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 PRR11Q96HE9 360 aaPredicted RBP6.38□□□□□ -1.39
CUX1-220ENST00000607092 PSMB7Q99436 277 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 KLF6Q99612 283 aaPredicted RBP6.38□□□□□ -1.39
CUX1-220ENST00000607092 DPYSL5Q9BPU6 564 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 LRRC61Q9BV99 259 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 EDEM3Q9BZQ6 932 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 TNKS2Q9H2K2 1166 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 ZDHHC6Q9H6R6 413 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 STARD5Q9NSY2 213 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 PIGVQ9NUD9 493 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 DKK3Q9UBP4 350 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 GULP1Q9UBP9 304 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 TUBD1Q9UJT1 453 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 APPL1Q9UKG1 709 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 GPR34Q9UPC5 381 aa6.38□□□□□ -1.39
CUX1-220ENST00000607092 A0A0D9SEW6 157 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 CFAP69A5D8W1 941 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 PPP1R3GB7ZBB8 358 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.37□□□□□ -1.39
CUX1-220ENST00000607092 K7ERQ8 282 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 SMAPO00193 183 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 CACNB4O00305 520 aaPredicted RBP6.37□□□□□ -1.39
CUX1-220ENST00000607092 KRIT1O00522 736 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 HGSO14964 777 aaPredicted RBP6.37□□□□□ -1.39
CUX1-220ENST00000607092 AREL1O15033 823 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 EFSO43281 561 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 RAMP2O60895 175 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 SRGAP2O75044 1071 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 GRAP2O75791 330 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 CNTN5O94779 1100 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 TNFP01375 233 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 RPLP0P05388 317 aaKnown RBP6.37□□□□□ -1.39
CUX1-220ENST00000607092 GLB1P16278 677 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 TSHRP16473 764 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 SLC5A2P31639 672 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 MAN1A1P33908 653 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 EIF4A3P38919 411 aaKnown RBP6.37□□□□□ -1.39
CUX1-220ENST00000607092 NOP2P46087 812 aaKnown RBP6.37□□□□□ -1.39
CUX1-220ENST00000607092 GABRB2P47870 512 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 ATP1A2P50993 1020 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 PITX1P78337 314 aaPredicted RBP6.37□□□□□ -1.39
CUX1-220ENST00000607092 EIF2B5Q13144 721 aaKnown RBP6.37□□□□□ -1.39
CUX1-220ENST00000607092 MORC3Q14149 939 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 ARHGEF7Q14155 803 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 LRRC14Q15048 493 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 AGERQ15109 404 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 QPCTQ16769 361 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 MYLK3Q32MK0 819 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 ALFQ53S48 1182 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 FAM102AQ5T9C2 384 aaPredicted RBP6.37□□□□□ -1.39
CUX1-220ENST00000607092 KIAA1614Q5VZ46 1190 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 BRAT1Q6PJG6 821 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 LINGO4Q6UY18 593 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 GDPD4Q6W3E5 623 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 VPS36Q86VN1 386 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 ZNF677Q86XU0 584 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 ZNF683Q8IZ20 524 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 OR7D4Q8NG98 312 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 OR52K2Q8NGK3 314 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 GPBAR1Q8TDU6 330 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 ARHGEF2Q92974 986 aaKnown RBP6.37□□□□□ -1.39
CUX1-220ENST00000607092 CENPTQ96BT3 561 aa6.37□□□□□ -1.39
CUX1-220ENST00000607092 CATSPER2Q96P56 530 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms