RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 PRLRP16471 622 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 TCP1P17987 556 aaKnown RBP19.54■□□□□ 0.72
UPF1-209ENST00000600310 ADPRHP54922 357 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 RPL6Q02878 288 aaKnown RBP19.54■□□□□ 0.72
UPF1-209ENST00000600310 NIPAL4Q0D2K0 466 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 LONRF2Q1L5Z9 754 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 SPDYCQ5MJ68 293 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 PAPD7Q5XG87 772 aaKnown RBP19.54■□□□□ 0.72
UPF1-209ENST00000600310 PMS2CLQ68D20 193 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 FBXL19Q6PCT2 694 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 PRR23BQ6ZRT6 265 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 LPCAT2Q7L5N7 544 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 CADM4Q8NFZ8 388 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 OR14C36Q8NHC7 312 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 COG1Q8WTW3 980 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 NAPGQ99747 312 aaPredicted RBP19.54■□□□□ 0.72
UPF1-209ENST00000600310 GPR174Q9BXC1 333 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 PCED1AQ9H1Q7 454 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 KDM4CQ9H3R0 1056 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 USP29Q9HBJ7 922 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 DNPEPQ9ULA0 475 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 FANCMQ8IYD8 2048 aa19.54■□□□□ 0.72
UPF1-209ENST00000600310 EML5Q05BV3 1969 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 SHROOM3Q8TF72 1996 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 CTAGE9A4FU28 777 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 HTRA2O43464 458 aaPredicted RBP19.53■□□□□ 0.72
UPF1-209ENST00000600310 PLRG1O43660 514 aaKnown RBP19.53■□□□□ 0.72
UPF1-209ENST00000600310 LIASO43766 372 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 SEMA4FO95754 770 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 ADRB3P13945 408 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 TAS2R38P59533 333 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 IHHQ14623 411 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 ELF2Q15723 593 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 FAM182AQ5T1J6 154 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 BRAT1Q6PJG6 821 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 ZNF567Q8N184 647 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 ATG4AQ8WYN0 398 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 SPOCK2Q92563 424 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 NKD2Q969F2 451 aaPredicted RBP19.53■□□□□ 0.72
UPF1-209ENST00000600310 RAB7BQ96AH8 199 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 SLC25A51Q9H1U9 297 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 GLOD4Q9HC38 313 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 KLHL8Q9P2G9 620 aaPredicted RBP19.53■□□□□ 0.72
UPF1-209ENST00000600310 TRHDEQ9UKU6 1024 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 PCDHGC4Q9Y5F7 938 aa19.53■□□□□ 0.72
UPF1-209ENST00000600310 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 A0A1W2PQ67 120 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 LRRC72A6NJI9 287 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 C10orf142B7Z368 130 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 PROB1E7EW31 1015 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 KCNN4O15554 427 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 TIMP2P16035 220 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 CD68P34810 354 aaPredicted RBP19.52■□□□□ 0.72
UPF1-209ENST00000600310 SUOXP51687 545 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 ETF1P62495 437 aaKnown RBP19.52■□□□□ 0.72
UPF1-209ENST00000600310 TRAF2Q12933 501 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 CCNG2Q16589 344 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 CFAP58Q5T655 872 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 PID1Q7Z2X4 250 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 TTC7BQ86TV6 843 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 ZSWIM9Q86XI8 627 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 TMEFF1Q8IYR6 380 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.52■□□□□ 0.72
UPF1-209ENST00000600310 SUMF1Q8NBK3 374 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 OR2T34Q8NGX1 318 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 ACTRT1Q8TDG2 376 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 C1orf54Q8WWF1 131 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 IMP4Q96G21 291 aaKnown RBP19.52■□□□□ 0.72
UPF1-209ENST00000600310 MS4A14Q96JA4 679 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 RAB23Q9ULC3 237 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 SMG5Q9UPR3 1016 aaKnown RBP19.52■□□□□ 0.72
UPF1-209ENST00000600310 RAI2Q9Y5P3 530 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 PLXND1Q9Y4D7 1925 aa19.52■□□□□ 0.72
UPF1-209ENST00000600310 USP34Q70CQ2 3546 aa19.52■□□□□ 0.71
UPF1-209ENST00000600310 CFAP69A5D8W1 941 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 METTL12A8MUP2 240 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 FANCGO15287 622 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 AP1G1O43747 822 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 STK10O94804 968 aaKnown RBP19.51■□□□□ 0.71
UPF1-209ENST00000600310 MMP2P08253 660 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 SERPINF2P08697 491 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 ABL2P42684 1182 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 SKOR1P84550 965 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 OASLQ15646 514 aaKnown RBP19.51■□□□□ 0.71
UPF1-209ENST00000600310 SLC14A2Q15849 920 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 UGP2Q16851 508 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 DRICH1Q6PGQ1 229 aaPredicted RBP19.51■□□□□ 0.71
UPF1-209ENST00000600310 PRPF39Q86UA1 669 aaKnown RBP19.51■□□□□ 0.71
UPF1-209ENST00000600310 DEFB119Q8N690 84 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 FOXJ1Q92949 421 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 TADA1Q96BN2 335 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 LOXL4Q96JB6 756 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 NAP1L3Q99457 506 aaPredicted RBP19.51■□□□□ 0.71
UPF1-209ENST00000600310 C6orf106Q9H6K1 298 aaPredicted RBP19.51■□□□□ 0.71
UPF1-209ENST00000600310 PREBQ9HCU5 417 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 HOMER3Q9NSC5 361 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 FADS3Q9Y5Q0 445 aa19.51■□□□□ 0.71
UPF1-209ENST00000600310 C5orf60A6NFR6 353 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 FAM47DPA6NHR8 397 aa19.5■□□□□ 0.71
UPF1-209ENST00000600310 UPK3BL1B0FP48 263 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms