RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 EBF2Q9HAK2 575 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 DDX56Q9NY93 547 aaKnown RBP16.39■□□□□ 0.21
LSM4-206ENST00000600289 REXO2Q9Y3B8 237 aaKnown RBP16.39■□□□□ 0.21
LSM4-206ENST00000600289 NEUROG3Q9Y4Z2 214 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 TRPM6Q9BX84 2022 aa16.39■□□□□ 0.21
LSM4-206ENST00000600289 PCNX2A6NKB5 2137 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 C3orf70A6NLC5 250 aaPredicted RBP16.38■□□□□ 0.21
LSM4-206ENST00000600289 C4orf47A7E2U8 309 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 PJA2O43164 708 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 PSTPIP1O43586 416 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 BUB1BO60566 1050 aaPredicted RBP16.38■□□□□ 0.21
LSM4-206ENST00000600289 RNGTTO60942 597 aaKnown RBP16.38■□□□□ 0.21
LSM4-206ENST00000600289 PALMO75781 387 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 UGT2B4P06133 528 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 GJC1P36383 396 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 HSPA9P38646 679 aaKnown RBP16.38■□□□□ 0.21
LSM4-206ENST00000600289 MAPK8P45983 427 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 RENBPP51606 427 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 SUOXP51687 545 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 GRIK2Q13002 908 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 TEAD4Q15561 434 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 SETMARQ53H47 684 aaPredicted RBP16.38■□□□□ 0.21
LSM4-206ENST00000600289 FBXL19Q6PCT2 694 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 C19orf48Q6RUI8 117 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 IL27RAQ6UWB1 636 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 PRPF39Q86UA1 669 aaKnown RBP16.38■□□□□ 0.21
LSM4-206ENST00000600289 ATPAF2Q8N5M1 289 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 PQLC3Q8N755 202 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 OR6K2Q8NGY2 324 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 RAPGEF5Q92565 580 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 CINPQ9BW66 212 aaPredicted RBP16.38■□□□□ 0.21
LSM4-206ENST00000600289 KLHL11Q9NVR0 708 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 DNAAF2Q9NVR5 837 aaKnown RBP16.38■□□□□ 0.21
LSM4-206ENST00000600289 SEPT3Q9UH03 358 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 FADS3Q9Y5Q0 445 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 SLCO1B1Q9Y6L6 691 aa16.38■□□□□ 0.21
LSM4-206ENST00000600289 C16orf96A6NNT2 1141 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 GOLGA6L6A8MZA4 724 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 UPK3BL1B0FP48 263 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 UPK3BL2E5RIL1 263 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 VILLO15195 856 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 MFSD11O43934 449 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 GJB3O75712 270 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 CEACAM1P13688 526 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 COMTP21964 271 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 GKP32189 559 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 NOP2P46087 812 aaKnown RBP16.37■□□□□ 0.21
LSM4-206ENST00000600289 VAV2P52735 878 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 BNC1Q01954 994 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 LBRQ14739 615 aaKnown RBP16.37■□□□□ 0.21
LSM4-206ENST00000600289 TMEM259Q4ZIN3 620 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 SLC9A4Q6AI14 798 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 NAPEPLDQ6IQ20 393 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 KIAA1161Q6NSJ0 714 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 SRLQ86TD4 932 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 HORMAD1Q86X24 394 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 PROSER1Q86XN7 944 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 MINDY1Q8N5J2 469 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 NETO2Q8NC67 525 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 TSEN2Q8NCE0 465 aaKnown RBP16.37■□□□□ 0.21
LSM4-206ENST00000600289 SPOCK2Q92563 424 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 EXOC2Q96KP1 924 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 ZNF641Q96N77 438 aaPredicted RBP16.37■□□□□ 0.21
LSM4-206ENST00000600289 KLHL32Q96NJ5 620 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 RNF157Q96PX1 679 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 KLK13Q9UKR3 277 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 ALG6Q9Y672 507 aa16.37■□□□□ 0.21
LSM4-206ENST00000600289 A0A1W2PR77 199 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 LRRD1A4D1F6 860 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 RCCD1A6NED2 376 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 AREL1O15033 823 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 INSIG1O15503 277 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 TSPAN6O43657 245 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 SPOPO43791 374 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 HYAL3O43820 417 aaPredicted RBP16.36■□□□□ 0.21
LSM4-206ENST00000600289 ZNF883P0CG24 379 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 GARSP41250 739 aaKnown RBP16.36■□□□□ 0.21
LSM4-206ENST00000600289 RGRP47804 291 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 ATXN3P54252 364 aaPredicted RBP16.36■□□□□ 0.21
LSM4-206ENST00000600289 GSDMDP57764 484 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 AP1S1P61966 158 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 SLC10A7Q0GE19 358 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 SLC14A1Q13336 389 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 TAZQ16635 292 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 RALGPS1Q5JS13 557 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 TIGD7Q6NT04 549 aaPredicted RBP16.36■□□□□ 0.21
LSM4-206ENST00000600289 IQCHQ86VS3 1027 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 TXLNBQ8N3L3 684 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 TEX26Q8N6G2 289 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 SLC6A18Q96N87 628 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 TSGA13Q96PP4 275 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 MGME1Q9BQP7 344 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 ATP13A3Q9H7F0 1226 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 FSCN3Q9NQT6 498 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 SALL4Q9UJQ4 1053 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 TFR2Q9UP52 801 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 MSRB2Q9Y3D2 182 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 KALRNO60229 2985 aa16.36■□□□□ 0.21
LSM4-206ENST00000600289 A0A1W2PQU0 124 aa16.35■□□□□ 0.21
LSM4-206ENST00000600289 PRAMEF26H0Y7S4 382 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms