RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 PRPF39Q86UA1 669 aaKnown RBP15.38■□□□□ 0.05
LIG1-219ENST00000600055 NT5DC3Q86UY8 548 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 HORMAD1Q86X24 394 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 ZSWIM9Q86XI8 627 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 CCDC50Q8IVM0 306 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 RCOR2Q8IZ40 523 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 TXLNBQ8N3L3 684 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 TEX26Q8N6G2 289 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 CCNYQ8ND76 341 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 NETO1Q8TDF5 533 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 MAML1Q92585 1016 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 TSGA13Q96PP4 275 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 TUBGCP5Q96RT8 1024 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 LGMNQ99538 433 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 MGME1Q9BQP7 344 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 NT5MQ9NPB1 228 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 SAE1Q9UBE0 346 aaPredicted RBP15.38■□□□□ 0.05
LIG1-219ENST00000600055 DKK3Q9UBP4 350 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 PCDHA3Q9Y5H8 950 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 GVINP1Q7Z2Y8 2422 aa15.38■□□□□ 0.05
LIG1-219ENST00000600055 ZNF292O60281 2723 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 GON4LQ3T8J9 2241 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 hCG_1818297A0A087WSY0 165 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 C4orf47A7E2U8 309 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 ARHGAP33O14559 1287 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 SLC31A1O15431 190 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 AP1G1O43747 822 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 CST8O60676 142 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 FTCDO95954 541 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 WNT1P04628 370 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 PRKCGP05129 697 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 PECAM1P16284 738 aaPredicted RBP15.37■□□□□ 0.05
LIG1-219ENST00000600055 PRLRP16471 622 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 ZFXP17010 805 aaPredicted RBP15.37■□□□□ 0.05
LIG1-219ENST00000600055 CR2P20023 1033 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 MX2P20592 715 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 CTNNA2P26232 953 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 PEX5P50542 639 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 GRIK2Q13002 908 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 HNRNPDQ14103 355 aaKnown RBP15.37■□□□□ 0.05
LIG1-219ENST00000600055 GSE1Q14687 1217 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 GRM3Q14832 879 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 ZNF284Q2VY69 593 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 TFDP3Q5H9I0 405 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 TIGD7Q6NT04 549 aaPredicted RBP15.37■□□□□ 0.05
LIG1-219ENST00000600055 CCDC13Q8IYE1 715 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 BBS5Q8N3I7 341 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.37■□□□□ 0.05
LIG1-219ENST00000600055 EXD1Q8NHP7 514 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 ALG3Q92685 438 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 HDAC11Q96DB2 347 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 SERAC1Q96JX3 654 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 ZNF641Q96N77 438 aaPredicted RBP15.37■□□□□ 0.05
LIG1-219ENST00000600055 ZNF830Q96NB3 372 aaPredicted RBP15.37■□□□□ 0.05
LIG1-219ENST00000600055 NUDCD1Q96RS6 583 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 MYOCQ99972 504 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 HEMGNQ9BXL5 484 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 ATP13A3Q9H7F0 1226 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 NOD2Q9HC29 1040 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 SCUBE2Q9NQ36 999 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 AASDHPPTQ9NRN7 309 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 RBM22Q9NW64 420 aaKnown RBP eCLIP15.37■□□□□ 0.05
LIG1-219ENST00000600055 CDV3Q9UKY7 258 aaKnown RBP15.37■□□□□ 0.05
LIG1-219ENST00000600055 PACSIN2Q9UNF0 486 aaPredicted RBP15.37■□□□□ 0.05
LIG1-219ENST00000600055 CA5BQ9Y2D0 317 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.37■□□□□ 0.05
LIG1-219ENST00000600055 CAPN6Q9Y6Q1 641 aa15.37■□□□□ 0.05
LIG1-219ENST00000600055 TSPAN11A1L157 253 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 KCNK1O00180 336 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 AREL1O15033 823 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 CCNB1P14635 433 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 SERPINA4P29622 427 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 HSPA9P38646 679 aaKnown RBP15.36■□□□□ 0.05
LIG1-219ENST00000600055 AFF3P51826 1226 aaKnown RBP15.36■□□□□ 0.05
LIG1-219ENST00000600055 AP1S1P61966 158 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 RACK1P63244 317 aaKnown RBP15.36■□□□□ 0.05
LIG1-219ENST00000600055 SEMG2Q02383 582 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 BCL2L1Q07817 233 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 PPIDQ08752 370 aaKnown RBP15.36■□□□□ 0.05
LIG1-219ENST00000600055 FGL2Q14314 439 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 TMEM259Q4ZIN3 620 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 AADACL2Q6P093 401 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 NEK5Q6P3R8 708 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 MINDY1Q8N5J2 469 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 RAB7BQ96AH8 199 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 HAUS1Q96CS2 278 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 RBM41Q96IZ5 413 aaKnown RBP15.36■□□□□ 0.05
LIG1-219ENST00000600055 FEM1CQ96JP0 617 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 OLFM3Q96PB7 478 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 HERPUD2Q9BSE4 406 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 FZD3Q9NPG1 666 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 TMEM9BQ9NQ34 198 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 AMFRQ9UKV5 643 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 GUCA1BQ9UMX6 200 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 PCDHGC4Q9Y5F7 938 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 LAMA1P25391 3075 aa15.36■□□□□ 0.05
LIG1-219ENST00000600055 DMXL1Q9Y485 3027 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 A0A1W2PR77 199 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 CCDC66A2RUB6 948 aa15.35■□□□□ 0.05
LIG1-219ENST00000600055 IGLON5A6NGN9 336 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms