RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 LRRC53A6NM62 1247 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 SMTNL1A8MU46 457 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 EIF3CLB5ME19 914 aaKnown RBP9.91□□□□□ -0.82
VRK3-216ENST00000599342 EEF2KO00418 725 aaKnown RBP9.91□□□□□ -0.82
VRK3-216ENST00000599342 TOR1BO14657 336 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 SPINT1O43278 529 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 DAPK3O43293 454 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 ATMINO43313 823 aaPredicted RBP9.91□□□□□ -0.82
VRK3-216ENST00000599342 OPA1O60313 960 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 BRINP1O60477 761 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 MMP20O60882 483 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 RNF8O76064 485 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 PIGNO95427 931 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 GIMD1P0DJR0 217 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 ACTN2P35609 894 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 IGFALSP35858 605 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 SUOXP51687 545 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 NDST2P52849 883 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 YPEL5P62699 121 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 OGDHQ02218 1023 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 MAMLD1Q13495 774 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 KLHL40Q2TBA0 621 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 DEFB133Q30KQ1 61 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 ANO6Q4KMQ2 910 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 ERAP2Q6P179 960 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 IRF2BP2Q7Z5L9 587 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 PAF1Q8N7H5 531 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 IFI44Q8TCB0 444 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 MAPK15Q8TD08 544 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 GLMNQ92990 594 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 CENPTQ96BT3 561 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 CELF6Q96J87 481 aaKnown RBP9.91□□□□□ -0.82
VRK3-216ENST00000599342 EIF3CQ99613 913 aaKnown RBP9.91□□□□□ -0.82
VRK3-216ENST00000599342 BPIFA3Q9BQP9 254 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 WRAP53Q9BUR4 548 aaKnown RBP9.91□□□□□ -0.82
VRK3-216ENST00000599342 CPEB1Q9BZB8 566 aaKnown RBP9.91□□□□□ -0.82
VRK3-216ENST00000599342 SLC13A1Q9BZW2 595 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 KLC2Q9H0B6 622 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 DHX35Q9H5Z1 703 aaKnown RBP9.91□□□□□ -0.82
VRK3-216ENST00000599342 CAAP1Q9H8G2 361 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 SP110Q9HB58 689 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 GPATCH2LQ9NWQ4 482 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 TAS2R14Q9NYV8 317 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 SPASTQ9UBP0 616 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 LHX3Q9UBR4 397 aa9.91□□□□□ -0.82
VRK3-216ENST00000599342 ZZEF1O43149 2961 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 CHD5Q8TDI0 1954 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 CPED1A4D0V7 1026 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 EIF4E1BA6NMX2 242 aaKnown RBP9.9□□□□□ -0.82
VRK3-216ENST00000599342 TPP1O14773 563 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 INSIG1O15503 277 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 TEX33O43247 280 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 TLX3O43711 291 aaPredicted RBP9.9□□□□□ -0.82
VRK3-216ENST00000599342 PRPSAP2O60256 369 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 PALMO75781 387 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 MYF5P13349 255 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 TIMP2P16035 220 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 EIF2S3P41091 472 aaKnown RBP9.9□□□□□ -0.82
VRK3-216ENST00000599342 RPIAP49247 311 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 BLKP51451 505 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 EIF2B5Q13144 721 aaKnown RBP9.9□□□□□ -0.82
VRK3-216ENST00000599342 COL9A2Q14055 689 aaPredicted RBP9.9□□□□□ -0.82
VRK3-216ENST00000599342 LRRC14Q15048 493 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 IRF4Q15306 451 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 CYTH1Q15438 398 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 NR0B2Q15466 257 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 CDKN3Q16667 212 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 TBC1D25Q3MII6 688 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 PRRT3Q5FWE3 981 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 TPRG1LQ5T0D9 272 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 ERMARDQ5T6L9 678 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 FAXCQ5TGI0 409 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 PLEKHA7Q6IQ23 1121 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 BRAT1Q6PJG6 821 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 MACC1Q6ZN28 852 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 PHACTR4Q8IZ21 702 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 RBFAQ8N0V3 343 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 TP53I13Q8NBR0 393 aaPredicted RBP9.9□□□□□ -0.82
VRK3-216ENST00000599342 SNIP1Q8TAD8 396 aaKnown RBP9.9□□□□□ -0.82
VRK3-216ENST00000599342 HCAR2Q8TDS4 363 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 FGF11Q92914 225 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 VOPP1Q96AW1 172 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 TBATAQ96M53 351 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 ZNF641Q96N77 438 aaPredicted RBP9.9□□□□□ -0.82
VRK3-216ENST00000599342 TUBGCP5Q96RT8 1024 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 SYT11Q9BT88 431 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 SNRNP25Q9BV90 132 aaKnown RBP9.9□□□□□ -0.82
VRK3-216ENST00000599342 CINPQ9BW66 212 aaPredicted RBP9.9□□□□□ -0.82
VRK3-216ENST00000599342 SUV39H2Q9H5I1 410 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 HAUS4Q9H6D7 363 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 LRRC19Q9H756 370 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 PDFQ9HBH1 243 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 RTN4Q9NQC3 1192 aaKnown RBP9.9□□□□□ -0.82
VRK3-216ENST00000599342 TMEM63CQ9P1W3 806 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 PCSK1NQ9UHG2 260 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 KLF15Q9UIH9 416 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 SALL4Q9UJQ4 1053 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 DOLKQ9UPQ8 538 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 PCDHB1Q9Y5F3 818 aa9.9□□□□□ -0.82
VRK3-216ENST00000599342 SCINQ9Y6U3 715 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms