RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 UBXN1Q04323 297 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 POLD3Q15054 466 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-212ENST00000597995 TPRG1LQ5T0D9 272 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 PHLDB2Q86SQ0 1253 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 FAM131BQ86XD5 332 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 DRC7Q8IY82 874 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 ARL14Q8N4G2 192 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 EMC1Q8N766 993 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 MSANTD4Q8NCY6 345 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 OR2AP1Q8NGE2 309 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 COL26A1Q96A83 441 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 CENPTQ96BT3 561 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 CFAP57Q96MR6 1250 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 FUCA2Q9BTY2 467 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 TM6SF2Q9BZW4 377 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 MAGEH1Q9H213 219 aa12.7□□□□□ -0.38
TRIM28-212ENST00000597995 COL27A1Q8IZC6 1860 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-212ENST00000597995 CHD5Q8TDI0 1954 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 B8ZZF3 427 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 K7ENP7 123 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 AREL1O15033 823 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 TPM2P07951 284 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 C6P13671 934 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 RHOQP17081 205 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 CDK11BP21127 795 aaKnown RBP12.69□□□□□ -0.38
TRIM28-212ENST00000597995 ADRA1BP35368 520 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 ACVRL1P37023 503 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 STAT1P42224 750 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 MYLK3Q32MK0 819 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 ARL13BQ3SXY8 428 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 C6orf132Q5T0Z8 1188 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 MANEALQ5VSG8 457 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 CAVIN1Q6NZI2 390 aaKnown RBP12.69□□□□□ -0.38
TRIM28-212ENST00000597995 INO80CQ6PI98 192 aaPredicted RBP12.69□□□□□ -0.38
TRIM28-212ENST00000597995 CLEC14AQ86T13 490 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 PHACTR4Q8IZ21 702 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 RYBPQ8N488 228 aaPredicted RBP12.69□□□□□ -0.38
TRIM28-212ENST00000597995 NEK11Q8NG66 645 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 WDR36Q8NI36 951 aaKnown RBP12.69□□□□□ -0.38
TRIM28-212ENST00000597995 JOSD2Q8TAC2 188 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 ARHGEF2Q92974 986 aaKnown RBP12.69□□□□□ -0.38
TRIM28-212ENST00000597995 VOPP1Q96AW1 172 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 BPIFA3Q9BQP9 254 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 C11orf70Q9BRQ4 267 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 C1QTNF7Q9BXJ2 289 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 METTL5Q9NRN9 209 aaKnown RBP12.69□□□□□ -0.38
TRIM28-212ENST00000597995 OR12D3Q9UGF7 316 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 APOBEC3BQ9UH17 382 aaKnown RBP12.69□□□□□ -0.38
TRIM28-212ENST00000597995 HPCAL4Q9UM19 191 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 DAAM1Q9Y4D1 1078 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 ACTL7AQ9Y615 435 aa12.69□□□□□ -0.38
TRIM28-212ENST00000597995 KRIT1O00522 736 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 MUSKO15146 869 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 GCATO75600 419 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 ANXA6P08133 673 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 GKP32189 559 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 ADKP55263 362 aaKnown RBP12.68□□□□□ -0.38
TRIM28-212ENST00000597995 CLEC16AQ2KHT3 1053 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 C15orf59Q2T9L4 293 aaPredicted RBP12.68□□□□□ -0.38
TRIM28-212ENST00000597995 CCDC14Q49A88 953 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 PRRT3Q5FWE3 981 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 PERM1Q5SV97 790 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 ESRP1Q6NXG1 681 aaKnown RBP12.68□□□□□ -0.38
TRIM28-212ENST00000597995 GDPD4Q6W3E5 623 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 TTC7BQ86TV6 843 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 NLRP14Q86W24 1093 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 SLC35F3Q8IY50 421 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 RBFAQ8N0V3 343 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 ANKRD20A12PQ8NF67 263 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 RXFP2Q8WXD0 754 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 MED8Q96G25 268 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 PCMTD1Q96MG8 357 aaPredicted RBP12.68□□□□□ -0.38
TRIM28-212ENST00000597995 KLHL32Q96NJ5 620 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 MAGEB5Q9BZ81 275 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 SLC13A1Q9BZW2 595 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 TCEAL2Q9H3H9 227 aaPredicted RBP12.68□□□□□ -0.38
TRIM28-212ENST00000597995 RTN4Q9NQC3 1192 aaKnown RBP12.68□□□□□ -0.38
TRIM28-212ENST00000597995 TMEM248Q9NWD8 314 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 GGT7Q9UJ14 662 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 ITM2BQ9Y287 266 aa12.68□□□□□ -0.38
TRIM28-212ENST00000597995 KIF26BQ2KJY2 2108 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 CCDC187A0A096LP49 1063 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 TCRBV5S1A1TA0A578 114 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 ZSCAN5CA6NGD5 496 aaPredicted RBP12.67□□□□□ -0.38
TRIM28-212ENST00000597995 TMX2-CTNND1H3BSU7 103 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 NTN3O00634 580 aaPredicted RBP12.67□□□□□ -0.38
TRIM28-212ENST00000597995 YY2O15391 372 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 KDELR3O43731 214 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 TM7SF2O76062 418 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 TNFSF15O95150 251 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 UGT2B4P06133 528 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 ITGA2BP08514 1039 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 IGFALSP35858 605 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 PEX5P50542 639 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 BLKP51451 505 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 ATP11AP98196 1134 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 PPARDQ03181 441 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 EIF3IQ13347 325 aaKnown RBP12.67□□□□□ -0.38
TRIM28-212ENST00000597995 C1orf61Q13536 156 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 SPIDRQ14159 915 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms