RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 ETV5P41161 510 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 CCR10P46092 362 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 PEX5P50542 639 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 PMS1P54277 932 aaKnown RBP10.27□□□□□ -0.77
TRIM28-210ENST00000597618 SNX16P57768 344 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 IGFBP7Q16270 282 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 ALG11Q2TAA5 492 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 CERCAMQ5T4B2 595 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 OLFML1Q6UWY5 402 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 C11orf57Q6ZUT1 292 aaPredicted RBP10.27□□□□□ -0.77
TRIM28-210ENST00000597618 SPRED1Q7Z699 444 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 SLITRK4Q8IW52 837 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 RYBPQ8N488 228 aaPredicted RBP10.27□□□□□ -0.77
TRIM28-210ENST00000597618 Q8N9G6 341 aaPredicted RBP10.27□□□□□ -0.77
TRIM28-210ENST00000597618 ATL2Q8NHH9 583 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 CXorf40AQ8TE69 158 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 ISG20Q96AZ6 181 aaKnown RBP10.27□□□□□ -0.77
TRIM28-210ENST00000597618 C1orf74Q96LT6 269 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 CEP63Q96MT8 703 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 CPXM1Q96SM3 734 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 EPAS1Q99814 870 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 SLC12A9Q9BXP2 914 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 OSBPL1AQ9BXW6 950 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 TM6SF2Q9BZW4 377 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 PIGVQ9NUD9 493 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 TMEM51Q9NW97 253 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 RRN3Q9NYV6 651 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 MPP6Q9NZW5 540 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 RNF215Q9Y6U7 377 aa10.27□□□□□ -0.77
TRIM28-210ENST00000597618 TRIM49BA6NDI0 452 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 AGRPO00253 132 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 KRIT1O00522 736 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 UGT2B4P06133 528 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 ETFBP38117 255 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 CXCR3P49682 368 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 GEMIN4P57678 1058 aaKnown RBP10.26□□□□□ -0.77
TRIM28-210ENST00000597618 ARF5P84085 180 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 NFATC4Q14934 902 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 NCAPHQ15003 741 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 POLD3Q15054 466 aaPredicted RBP10.26□□□□□ -0.77
TRIM28-210ENST00000597618 IRF4Q15306 451 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 TCEA2Q15560 299 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 MAP9Q49MG5 647 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 CCDC40Q4G0X9 1142 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 PHF19Q5T6S3 580 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 ZNF658Q5TYW1 1059 aaPredicted RBP10.26□□□□□ -0.77
TRIM28-210ENST00000597618 OTUD1Q5VV17 481 aaPredicted RBP10.26□□□□□ -0.77
TRIM28-210ENST00000597618 FAM183BPQ6ZVS7 135 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 SLC26A9Q7LBE3 791 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 TP53I13Q8NBR0 393 aaPredicted RBP10.26□□□□□ -0.77
TRIM28-210ENST00000597618 EHBP1Q8NDI1 1231 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 GPR156Q8NFN8 814 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 OR6K2Q8NGY2 324 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 GPBAR1Q8TDU6 330 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 TSACCQ96A04 125 aaPredicted RBP10.26□□□□□ -0.77
TRIM28-210ENST00000597618 CATSPER2Q96P56 530 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 GTPBP4Q9BZE4 634 aaKnown RBP10.26□□□□□ -0.77
TRIM28-210ENST00000597618 ANLNQ9NQW6 1124 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 MBNL1Q9NR56 388 aaKnown RBP10.26□□□□□ -0.77
TRIM28-210ENST00000597618 KLQ9UEF7 1012 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 STAP1Q9ULZ2 295 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 SNX10Q9Y5X0 201 aa10.26□□□□□ -0.77
TRIM28-210ENST00000597618 SCN8AQ9UQD0 1980 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 CENPEQ02224 2701 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 BLACEA4D250 179 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 I6L893 689 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-210ENST00000597618 PSMA7O14818 248 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 MMP20O60882 483 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 ZNF202O95125 648 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 GSRP00390 522 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 F9P00740 461 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 HSP90AA1P07900 732 aaKnown RBP10.25□□□□□ -0.77
TRIM28-210ENST00000597618 GKP32189 559 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 SRP54P61011 504 aaKnown RBP10.25□□□□□ -0.77
TRIM28-210ENST00000597618 SNRPD1P62314 119 aaKnown RBP10.25□□□□□ -0.77
TRIM28-210ENST00000597618 KRT85P78386 507 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 GNA12Q03113 381 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 PKP1Q13835 747 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 ARHGEF7Q14155 803 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 LRRC14Q15048 493 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 KLHL40Q2TBA0 621 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 ENPP7Q6UWV6 458 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 ENOSF1Q7L5Y1 443 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 RD3Q7Z3Z2 195 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 TTC7BQ86TV6 843 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 IL22RA1Q8N6P7 574 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 ZNF397Q8NF99 534 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-210ENST00000597618 OR2AP1Q8NGE2 309 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 C9orf43Q8TAL5 461 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-210ENST00000597618 JPH3Q8WXH2 748 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-210ENST00000597618 PGAP3Q96FM1 320 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-210ENST00000597618 KLHL32Q96NJ5 620 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 RBM15Q96T37 977 aaKnown RBP eCLIP10.25□□□□□ -0.778e-8■■□□□ 14
TRIM28-210ENST00000597618 NPY6RQ99463 290 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 ZYG11BQ9C0D3 744 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 INTS2Q9H0H0 1204 aaKnown RBP10.25□□□□□ -0.77
TRIM28-210ENST00000597618 SYNCQ9H7C4 482 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 LRRC4CQ9HCJ2 640 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 ZNF212Q9UDV6 495 aa10.25□□□□□ -0.77
TRIM28-210ENST00000597618 ANKRD17O75179 2603 aaKnown RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms