RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 PGBD5Q8N414 524 aa19.89■□□□□ 0.77
SHKBP1-214ENST00000597396 TEX26Q8N6G2 289 aa19.89■□□□□ 0.77
SHKBP1-214ENST00000597396 ATXN2Q99700 1313 aaKnown RBP19.89■□□□□ 0.77
SHKBP1-214ENST00000597396 SUV39H2Q9H5I1 410 aa19.89■□□□□ 0.77
SHKBP1-214ENST00000597396 SEPT10Q9P0V9 454 aa19.89■□□□□ 0.77
SHKBP1-214ENST00000597396 TP53BP1Q12888 1972 aaPredicted RBP19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 ADAMTS9Q9P2N4 1935 aa19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 APOC4-APOC2K7ER74 178 aa19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 KCNK1O00180 336 aa19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 TJP3O95049 919 aa19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 APOC2P02655 101 aa19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 XPAP23025 273 aaPredicted RBP19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 SPEM2Q0P670 501 aa19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 CCDC6Q16204 474 aa19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 SEL1L2Q5TEA6 688 aa19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 MEI1Q5TIA1 1274 aa19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 SYT12Q8IV01 421 aa19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 TFB1MQ8WVM0 346 aaKnown RBP19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 ZNF641Q96N77 438 aaPredicted RBP19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 NUDCD1Q96RS6 583 aa19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 POLR1EQ9GZS1 481 aaKnown RBP19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 MIR1-1HGQ9H1L0 117 aa19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 PREBQ9HCU5 417 aa19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 DKK3Q9UBP4 350 aa19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 AMACRQ9UHK6 382 aa19.88■□□□□ 0.77
SHKBP1-214ENST00000597396 LRRK1Q38SD2 2015 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 TTC24A2A3L6 582 aaPredicted RBP19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 GOLGA6L9A6NEM1 432 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 LRP3O75074 770 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 GJB3O75712 270 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 PCDH8O95206 1070 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 JCHAINP01591 159 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 CR2P20023 1033 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 MAOBP27338 520 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 TAS2R38P59533 333 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 IFI35P80217 286 aaPredicted RBP19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 RALGPS1Q5JS13 557 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 B4GALNT4Q76KP1 1039 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 DGLUCYQ7Z3D6 616 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 ZC3H18Q86VM9 953 aaKnown RBP19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 CAMK1DQ8IU85 385 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 REXO1L1PQ8IX06 675 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 RAB7BQ96AH8 199 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 VOPP1Q96AW1 172 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 BIRC7Q96CA5 298 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 SEMA3CQ99985 751 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 HERPUD2Q9BSE4 406 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 TRMT1Q9NXH9 659 aaKnown RBP19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 EIF2B4Q9UI10 523 aaKnown RBP19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 PILRBQ9UKJ0 227 aa19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.87■□□□□ 0.77
SHKBP1-214ENST00000597396 H7C0C1 242 aa19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 NEMP1O14524 444 aa19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 HLA-DQB2P05538 268 aa19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 ABL2P42684 1182 aa19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 ATP5OP48047 213 aa19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 CCR5P51681 352 aa19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 OTUD4Q01804 1114 aaKnown RBP19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 PUM1Q14671 1186 aaKnown RBP eCLIP19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 PRKD1Q15139 912 aaPredicted RBP19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 NOMO1Q15155 1222 aa19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 TTC7BQ86TV6 843 aa19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 ACTL9Q8TC94 416 aa19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 HCAR2Q8TDS4 363 aa19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 DNASE2BQ8WZ79 361 aa19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 IL12RB2Q99665 862 aa19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 NOD2Q9HC29 1040 aa19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 VPS45Q9NRW7 570 aa19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 SUSD2Q9UGT4 822 aa19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 TPX2Q9ULW0 747 aaKnown RBP19.86■□□□□ 0.77
SHKBP1-214ENST00000597396 HACD1B0YJ81 288 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 RNGTTO60942 597 aaKnown RBP19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 IGHV4-34P06331 123 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 GNSP15586 552 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 HOXD12P35452 270 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 PPP2CBP62714 309 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 PPP2CAP67775 309 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 ZBTB17Q13105 803 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 XRCC4Q13426 336 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 LRRC73Q5JTD7 316 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 BRAT1Q6PJG6 821 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 RABEPKQ7Z6M1 372 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 PRPF39Q86UA1 669 aaKnown RBP19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 QKIQ96PU8 341 aaKnown RBP eCLIP19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 CEP41Q9BYV8 373 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 SMOC1Q9H4F8 434 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 SEMA4GQ9NTN9 838 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 TMEM74BQ9NUR3 256 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 FADS3Q9Y5Q0 445 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 DCHS1Q96JQ0 3298 aa19.85■□□□□ 0.77
SHKBP1-214ENST00000597396 CACNA1AO00555 2505 aa19.84■□□□□ 0.77
SHKBP1-214ENST00000597396 CEP250Q9BV73 2442 aa19.84■□□□□ 0.77
SHKBP1-214ENST00000597396 TSPAN11A1L157 253 aa19.84■□□□□ 0.77
SHKBP1-214ENST00000597396 UPK3BL1B0FP48 263 aa19.84■□□□□ 0.77
SHKBP1-214ENST00000597396 UPK3BL2E5RIL1 263 aa19.84■□□□□ 0.77
SHKBP1-214ENST00000597396 KCNK3O14649 394 aa19.84■□□□□ 0.77
SHKBP1-214ENST00000597396 MTSS1O43312 755 aa19.84■□□□□ 0.77
SHKBP1-214ENST00000597396 AP1G1O43747 822 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms