RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 SUMF1Q8NBK3 374 aa10.68□□□□□ -0.7
LIG1-210ENST00000596332 CCDC110Q8TBZ0 833 aa10.68□□□□□ -0.7
LIG1-210ENST00000596332 GAB3Q8WWW8 586 aa10.68□□□□□ -0.7
LIG1-210ENST00000596332 ZC3H10Q96K80 434 aaKnown RBP10.68□□□□□ -0.7
LIG1-210ENST00000596332 ZNF641Q96N77 438 aaPredicted RBP10.68□□□□□ -0.7
LIG1-210ENST00000596332 AGAP3Q96P47 875 aa10.68□□□□□ -0.7
LIG1-210ENST00000596332 FCRL5Q96RD9 977 aa10.68□□□□□ -0.7
LIG1-210ENST00000596332 TUBGCP5Q96RT8 1024 aa10.68□□□□□ -0.7
LIG1-210ENST00000596332 RBM15Q96T37 977 aaKnown RBP eCLIP10.68□□□□□ -0.7
LIG1-210ENST00000596332 PHOX2BQ99453 314 aa10.68□□□□□ -0.7
LIG1-210ENST00000596332 MLPHQ9BV36 600 aaPredicted RBP10.68□□□□□ -0.7
LIG1-210ENST00000596332 AP1M1Q9BXS5 423 aa10.68□□□□□ -0.7
LIG1-210ENST00000596332 DUSP15Q9H1R2 295 aaPredicted RBP10.68□□□□□ -0.7
LIG1-210ENST00000596332 SLC25A51Q9H1U9 297 aa10.68□□□□□ -0.7
LIG1-210ENST00000596332 FBXL12Q9NXK8 326 aa10.68□□□□□ -0.7
LIG1-210ENST00000596332 SCML1Q9UN30 329 aa10.68□□□□□ -0.7
LIG1-210ENST00000596332 CYP8B1Q9UNU6 501 aa10.68□□□□□ -0.7
LIG1-210ENST00000596332 PCDHGA2Q9Y5H1 932 aa10.68□□□□□ -0.7
LIG1-210ENST00000596332 SAR1BQ9Y6B6 198 aa10.68□□□□□ -0.7
LIG1-210ENST00000596332 SHROOM3Q8TF72 1996 aa10.68□□□□□ -0.7
LIG1-210ENST00000596332 PLXND1Q9Y4D7 1925 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 A0A0U1RQS6 177 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 LOC285095A0A1B0GVY8 99 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 KCNN4O15554 427 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 PLRG1O43660 514 aaKnown RBP10.67□□□□□ -0.7
LIG1-210ENST00000596332 MT-CYBP00156 380 aaPredicted RBP10.67□□□□□ -0.7
LIG1-210ENST00000596332 DNTTP04053 509 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 IGHV4-34P06331 123 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 ITGAVP06756 1048 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 ZSCAN5DPP0CG00 497 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 TCP1P17987 556 aaKnown RBP10.67□□□□□ -0.7
LIG1-210ENST00000596332 ADRA1AP35348 466 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 NBL1P41271 181 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 CD86P42081 329 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 AP1S1P61966 158 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 ZNF235Q14590 738 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 SLC14A2Q15849 920 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 PLK5Q496M5 336 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 KCTD11Q693B1 232 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 ERN2Q76MJ5 926 aaKnown RBP10.67□□□□□ -0.7
LIG1-210ENST00000596332 KBTBD6Q86V97 674 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 CDKL3Q8IVW4 592 aaPredicted RBP10.67□□□□□ -0.7
LIG1-210ENST00000596332 PGBD3Q8N328 593 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.67□□□□□ -0.7
LIG1-210ENST00000596332 C1orf216Q8TAB5 229 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 FUBP1Q96AE4 644 aaKnown RBP10.67□□□□□ -0.7
LIG1-210ENST00000596332 TOE1Q96GM8 510 aaKnown RBP10.67□□□□□ -0.7
LIG1-210ENST00000596332 C16orf45Q96MC5 204 aaPredicted RBP10.67□□□□□ -0.7
LIG1-210ENST00000596332 SPATA13Q96N96 652 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 VAT1Q99536 393 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 TDRD1Q9BXT4 1180 aaKnown RBP10.67□□□□□ -0.7
LIG1-210ENST00000596332 FRMD8P1Q9BZ68 369 aaPredicted RBP10.67□□□□□ -0.7
LIG1-210ENST00000596332 POLR1EQ9GZS1 481 aaKnown RBP10.67□□□□□ -0.7
LIG1-210ENST00000596332 KCNH6Q9H252 994 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 C6orf106Q9H6K1 298 aaPredicted RBP10.67□□□□□ -0.7
LIG1-210ENST00000596332 SEPT10Q9P0V9 454 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 BCCIPQ9P287 314 aaKnown RBP eCLIP10.67□□□□□ -0.7
LIG1-210ENST00000596332 FZD4Q9ULV1 537 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 ZFR2Q9UPR6 939 aaKnown RBP10.67□□□□□ -0.7
LIG1-210ENST00000596332 FADS3Q9Y5Q0 445 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 NUMA1Q14980 2115 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 GPR179Q6PRD1 2367 aa10.67□□□□□ -0.7
LIG1-210ENST00000596332 WDR87Q6ZQQ6 2873 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 PGRMC1O00264 195 aaKnown RBP10.66□□□□□ -0.7
LIG1-210ENST00000596332 KPNA3O00505 521 aaPredicted RBP10.66□□□□□ -0.7
LIG1-210ENST00000596332 RIOK3O14730 519 aaKnown RBP10.66□□□□□ -0.7
LIG1-210ENST00000596332 MTSS1O43312 755 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 RNASEH1O60930 286 aaKnown RBP10.66□□□□□ -0.7
LIG1-210ENST00000596332 ZNF217O75362 1048 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 RNASEH2AO75792 299 aaKnown RBP10.66□□□□□ -0.7
LIG1-210ENST00000596332 RPP40O75818 363 aaKnown RBP10.66□□□□□ -0.7
LIG1-210ENST00000596332 PGLSO95336 258 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 PRKCGP05129 697 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 ADRB3P13945 408 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 CES1P23141 567 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 CD6P30203 668 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 CASQ1P31415 396 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 STIP1P31948 543 aaKnown RBP10.66□□□□□ -0.7
LIG1-210ENST00000596332 RPL22P35268 128 aaKnown RBP10.66□□□□□ -0.7
LIG1-210ENST00000596332 COILP38432 576 aaPredicted RBP10.66□□□□□ -0.7
LIG1-210ENST00000596332 PTGIRP43119 386 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 RECQLP46063 649 aaPredicted RBP10.66□□□□□ -0.7
LIG1-210ENST00000596332 ADPRHP54922 357 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 PPP2CBP62714 309 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 PPP2CAP67775 309 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 SEMG2Q02383 582 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 RALGDSQ12967 914 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 OLIG2Q13516 323 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 FGL2Q14314 439 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 UGP2Q16851 508 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 USP39Q53GS9 565 aaKnown RBP10.66□□□□□ -0.7
LIG1-210ENST00000596332 LRRC73Q5JTD7 316 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 CCDC181Q5TID7 509 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 FAM46CQ5VWP2 391 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 DENND5AQ6IQ26 1287 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 PID1Q7Z2X4 250 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 ZNF572Q7Z3I7 529 aaPredicted RBP10.66□□□□□ -0.7
LIG1-210ENST00000596332 DSG4Q86SJ6 1040 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 FAM124AQ86V42 546 aa10.66□□□□□ -0.7
LIG1-210ENST00000596332 ZSCAN30Q86W11 494 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms