RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 DFNA5O60443 496 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 CBFA2T3O75081 653 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 PROSCO94903 275 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 TMEM253P0C7T8 217 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 RPS21P63220 83 aaKnown RBP15.3■□□□□ 0.04
TRIM28-205ENST00000595028 IL9RQ01113 521 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 OVGP1Q12889 678 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 TBX2Q13207 712 aaPredicted RBP15.3■□□□□ 0.04
TRIM28-205ENST00000595028 STAT4Q14765 748 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 TMCO3Q6UWJ1 677 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 GDPD4Q6W3E5 623 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 DBX2Q6ZNG2 339 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 ARHGAP36Q6ZRI8 547 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 ZSCAN30Q86W11 494 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 CPNE8Q86YQ8 564 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 SETD7Q8WTS6 366 aaKnown RBP15.3■□□□□ 0.04
TRIM28-205ENST00000595028 KLK6Q92876 244 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 ELF4Q99607 663 aaPredicted RBP15.3■□□□□ 0.04
TRIM28-205ENST00000595028 CHP1Q99653 195 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 MYOCQ99972 504 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 TRIM5Q9C035 493 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 NHEJ1Q9H9Q4 299 aaPredicted RBP15.3■□□□□ 0.04
TRIM28-205ENST00000595028 SPTLC3Q9NUV7 552 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 ETNK2Q9NVF9 386 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 LCMT1Q9UIC8 334 aa15.3■□□□□ 0.04
TRIM28-205ENST00000595028 COL5A1P20908 1838 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-205ENST00000595028 AKR1B15C9JRZ8 316 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-205ENST00000595028 YKT6O15498 198 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 INSIG1O15503 277 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 TSPAN6O43657 245 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 MAGEC1O60732 1142 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 HNRNPA2B1P22626 353 aaKnown RBP15.29■□□□□ 0.04
TRIM28-205ENST00000595028 AMPD1P23109 780 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 AKT2P31751 481 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 SERPINB6P35237 376 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 GJC1P36383 396 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 SSR1P43307 286 aaKnown RBP15.29■□□□□ 0.04
TRIM28-205ENST00000595028 CDH6P55285 790 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 IL10RBQ08334 325 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 KRT81Q14533 505 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 SUZ12Q15022 739 aaKnown RBP15.29■□□□□ 0.04
TRIM28-205ENST00000595028 TRIP6Q15654 476 aaKnown RBP15.29■□□□□ 0.04
TRIM28-205ENST00000595028 HADHQ16836 314 aaKnown RBP15.29■□□□□ 0.04
TRIM28-205ENST00000595028 COL28A1Q2UY09 1125 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 TP53INP2Q8IXH6 220 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 OXR1Q8N573 874 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 FAM71BQ8TC56 605 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 CCDC42Q96M95 316 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 BBC3Q96PG8 261 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-205ENST00000595028 CPEB1Q9BZB8 566 aaKnown RBP15.29■□□□□ 0.04
TRIM28-205ENST00000595028 ERVMER34-1Q9H9K5 563 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 FZD3Q9NPG1 666 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 RCOR3Q9P2K3 495 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-205ENST00000595028 DKK3Q9UBP4 350 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 IPO11Q9UI26 975 aaKnown RBP15.29■□□□□ 0.04
TRIM28-205ENST00000595028 GGT7Q9UJ14 662 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 ITM2BQ9Y287 266 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 BTBD3Q9Y2F9 522 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 PCDHB9Q9Y5E1 797 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 LRRK1Q38SD2 2015 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 KALRNO60229 2985 aa15.29■□□□□ 0.04
TRIM28-205ENST00000595028 TSPAN11A1L157 253 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 AREL1O15033 823 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 PALMO75781 387 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 PIGNO95427 931 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 EPHA8P29322 1005 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-205ENST00000595028 MAN1A1P33908 653 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 GRK6P43250 576 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 RGRP47804 291 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 ARRB1P49407 418 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-205ENST00000595028 TAS2R40P59535 323 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 FGL2Q14314 439 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 RFTN1Q14699 578 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-205ENST00000595028 GRM3Q14832 879 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 SHBQ15464 509 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 INAVAQ3KP66 663 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 LRRC73Q5JTD7 316 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 PRAMEF14Q5SWL7 426 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 TMCO4Q5TGY1 634 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 GCNT7Q6ZNI0 430 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 SPATS2Q86XZ4 545 aaKnown RBP15.28■□□□□ 0.04
TRIM28-205ENST00000595028 FEM1CQ96JP0 617 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 ZNF599Q96NL3 588 aa15.28■□□□□ 0.04
TRIM28-205ENST00000595028 CINPQ9BW66 212 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-205ENST00000595028 ARID1BQ8NFD5 2236 aaPredicted RBP15.27■□□□□ 0.04
TRIM28-205ENST00000595028 NEMP1O14524 444 aa15.27■□□□□ 0.04
TRIM28-205ENST00000595028 CD48P09326 243 aa15.27■□□□□ 0.04
TRIM28-205ENST00000595028 THEGLP0DJG4 465 aa15.27■□□□□ 0.04
TRIM28-205ENST00000595028 CSNK1DP48730 415 aa15.27■□□□□ 0.04
TRIM28-205ENST00000595028 ARSEP51690 589 aa15.27■□□□□ 0.04
TRIM28-205ENST00000595028 DPYSL3Q14195 570 aa15.27■□□□□ 0.04
TRIM28-205ENST00000595028 KYAT3Q6YP21 454 aaKnown RBP15.27■□□□□ 0.04
TRIM28-205ENST00000595028 ABI3BPQ7Z7G0 1075 aa15.27■□□□□ 0.04
TRIM28-205ENST00000595028 GLRX5Q86SX6 157 aa15.27■□□□□ 0.04
TRIM28-205ENST00000595028 ATPAF2Q8N5M1 289 aa15.27■□□□□ 0.04
TRIM28-205ENST00000595028 TSEN2Q8NCE0 465 aaKnown RBP15.27■□□□□ 0.04
TRIM28-205ENST00000595028 SAP25Q8TEE9 199 aa15.27■□□□□ 0.04
TRIM28-205ENST00000595028 KLHDC7BQ96G42 594 aa15.27■□□□□ 0.04
TRIM28-205ENST00000595028 TUBGCP5Q96RT8 1024 aa15.27■□□□□ 0.04
TRIM28-205ENST00000595028 ZNF670Q9BS34 389 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms