RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 NUDT6P53370 316 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 POU5F1BQ06416 359 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 HLFQ16534 295 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 PLK5Q496M5 336 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 HEPHL1Q6MZM0 1159 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 RNF144BQ7Z419 303 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 FOXP4Q8IVH2 680 aaPredicted RBP4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 SPICE1Q8N0Z3 855 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 ENDOVQ8N8Q3 282 aaKnown RBP4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 MIGA1Q8NAN2 632 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 NEXN-AS1Q8NBZ9 246 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 FIZ1Q96SL8 496 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 MAP7D2Q96T17 732 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 API5Q9BZZ5 524 aaKnown RBP4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 SEPSECSQ9HD40 501 aaKnown RBP4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 TMEM248Q9NWD8 314 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 FNIP2Q9P278 1114 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 SLC25A13Q9UJS0 675 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 NOL7Q9UMY1 257 aaKnown RBP4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 PCDHA10Q9Y5I2 948 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 ABCC4O15439 1325 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 A0A1W2PP64 1363 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 CD163L1Q9NR16 1453 aa4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 ARHGEF28Q8N1W1 1705 aaKnown RBP4.34□□□□□ -1.71
SMCHD1-208ENST00000583344 CLTCQ00610 1675 aaKnown RBP4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 NEXMIFQ5QGS0 1516 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 FAM135BQ49AJ0 1406 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 LINC01553A4QN01 128 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 EPB41L2O43491 1005 aaKnown RBP4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 TMCC1O94876 653 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 HEXIM1O94992 359 aaKnown RBP4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 LARGE1O95461 756 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 AMTP48728 403 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 DLX5P56178 289 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 LMOD3Q0VAK6 560 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 IDI1Q13907 227 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 ZNF672Q499Z4 452 aaPredicted RBP4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 C5orf22Q49AR2 442 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 OTUD3Q5T2D3 398 aaPredicted RBP4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 TTC22Q5TAA0 569 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 VWA5B1Q5TIE3 1220 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 WDR78Q5VTH9 848 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 VPS52Q8N1B4 723 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 ANKRD44Q8N8A2 993 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 OR1N1Q8NGS0 311 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 FAM216AQ8WUB2 273 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 STYXQ8WUJ0 223 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 ANP32BQ92688 251 aaKnown RBP4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 CCDC138Q96M89 665 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 DDX31Q9H8H2 851 aaKnown RBP4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 PTPRHQ9HD43 1115 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 POLKQ9UBT6 870 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 CDH22Q9UJ99 828 aa4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 DDX49Q9Y6V7 483 aaKnown RBP4.33□□□□□ -1.72
SMCHD1-208ENST00000583344 CFAP74Q9C0B2 1584 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 CPSF1Q10570 1443 aaKnown RBP4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 A0A0A0MQY5 61 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 GRM8O00222 908 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 SLC16A5O15375 505 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 ASAP2O43150 1006 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 KCNJ13O60928 360 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 SOX30O94993 753 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 CLDN7O95471 211 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 HOXB9P17482 250 aaPredicted RBP4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 CD53P19397 219 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 ABCB4P21439 1286 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 TCEA1P23193 301 aaKnown RBP4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 MCM2P49736 904 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 BNC1Q01954 994 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 TRAF2Q12933 501 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 CUL4AQ13619 759 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 SLC39A14Q15043 492 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 ZSCAN23Q3MJ62 389 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 ANO1Q5XXA6 986 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 MTFR2Q6P444 385 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 MTERF4Q7Z6M4 381 aaKnown RBP4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 GATAD2AQ86YP4 633 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 ENAHQ8N8S7 591 aaPredicted RBP4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 VPS37AQ8NEZ2 397 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 SLC35F5Q8WV83 523 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 ELAC2Q9BQ52 826 aaKnown RBP4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 IL25Q9H293 177 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 CAMSAP1Q5T5Y3 1602 aa4.32□□□□□ -1.72
SMCHD1-208ENST00000583344 FRMPD1Q5SYB0 1578 aa4.31□□□□□ -1.72
SMCHD1-208ENST00000583344 ARHGEF40Q8TER5 1519 aa4.31□□□□□ -1.72
SMCHD1-208ENST00000583344 KIAA0232Q92628 1395 aa4.31□□□□□ -1.72
SMCHD1-208ENST00000583344 CHL1O00533 1208 aa4.31□□□□□ -1.72
SMCHD1-208ENST00000583344 TCEA3O75764 348 aa4.31□□□□□ -1.72
SMCHD1-208ENST00000583344 TNFRSF6BO95407 300 aa4.31□□□□□ -1.72
SMCHD1-208ENST00000583344 UMODP07911 640 aa4.31□□□□□ -1.72
SMCHD1-208ENST00000583344 GYS1P13807 737 aa4.31□□□□□ -1.72
SMCHD1-208ENST00000583344 NAGAP17050 411 aa4.31□□□□□ -1.72
SMCHD1-208ENST00000583344 MSNP26038 577 aaKnown RBP4.31□□□□□ -1.72
SMCHD1-208ENST00000583344 PRKAR2BP31323 418 aa4.31□□□□□ -1.72
SMCHD1-208ENST00000583344 CDH12P55289 794 aa4.31□□□□□ -1.72
SMCHD1-208ENST00000583344 CDK18Q07002 472 aa4.31□□□□□ -1.72
SMCHD1-208ENST00000583344 TWISTNBQ3B726 338 aaPredicted RBP4.31□□□□□ -1.72
SMCHD1-208ENST00000583344 TRIM60Q495X7 471 aa4.31□□□□□ -1.72
SMCHD1-208ENST00000583344 SYTL3Q4VX76 610 aa4.31□□□□□ -1.72
SMCHD1-208ENST00000583344 ATG9BQ674R7 924 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms