RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SENP1Q9P0U3 644 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 TBC1D14Q9P2M4 693 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 ZNF180Q9UJW8 692 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 FCF1Q9Y324 198 aaKnown RBP10.63□□□□□ -0.71
SS18-217ENST00000580958 WNT6Q9Y6F9 365 aa10.63□□□□□ -0.71
SS18-217ENST00000580958 NEDD8-MDP1E9PL57 170 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 LINC01565O15544 149 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 NDST3O95803 873 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 GLP2RO95838 553 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 MT-CO1P00395 513 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 PENKP01210 267 aaPredicted RBP10.62□□□□□ -0.71
SS18-217ENST00000580958 MT-ND3P03897 115 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 FGF1P05230 155 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 SNRPAP09012 282 aaKnown RBP10.62□□□□□ -0.71
SS18-217ENST00000580958 HLA-DPA1P20036 260 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 CES1P23141 567 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 FSHRP23945 695 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 ADRA1DP25100 572 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 SERPINB9P50453 376 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 PLK1P53350 603 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 RHOAP61586 193 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 HYAL1Q12794 435 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 MSLNQ13421 630 aaPredicted RBP10.62□□□□□ -0.71
SS18-217ENST00000580958 BMPR2Q13873 1038 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 MPP2Q14168 576 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 PLEKHG6Q3KR16 790 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 INO80DQ53TQ3 878 aaPredicted RBP10.62□□□□□ -0.71
SS18-217ENST00000580958 TCEAL5Q5H9L2 206 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 PITRM1Q5JRX3 1037 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 RETSATQ6NUM9 610 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 ESRP1Q6NXG1 681 aaKnown RBP10.62□□□□□ -0.71
SS18-217ENST00000580958 ZNF449Q6P9G9 518 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 PACS1Q6VY07 963 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 SRLQ86TD4 932 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 KCNMB4Q86W47 210 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 NPAS3Q8IXF0 933 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 CELF5Q8N6W0 485 aaKnown RBP10.62□□□□□ -0.71
SS18-217ENST00000580958 PPP2R3CQ969Q6 453 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 ZNF778Q96MU6 729 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 LRRC3BQ96PB8 259 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 TRIB3Q96RU7 358 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 RANBP9Q96S59 729 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 SMC6Q96SB8 1091 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 KLF6Q99612 283 aaPredicted RBP10.62□□□□□ -0.71
SS18-217ENST00000580958 C2orf49Q9BVC5 232 aaPredicted RBP10.62□□□□□ -0.71
SS18-217ENST00000580958 BBS2Q9BXC9 721 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 NSUN3Q9H649 340 aaKnown RBP10.62□□□□□ -0.71
SS18-217ENST00000580958 SPHK2Q9NRA0 654 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 IARS2Q9NSE4 1012 aaKnown RBP10.62□□□□□ -0.71
SS18-217ENST00000580958 C20orf96Q9NUD7 363 aaPredicted RBP10.62□□□□□ -0.71
SS18-217ENST00000580958 ABCB8Q9NUT2 735 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 PRKAG3Q9UGI9 489 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 SLC2A6Q9UGQ3 507 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 CDH22Q9UJ99 828 aa10.62□□□□□ -0.71
SS18-217ENST00000580958 INTS6Q9UL03 887 aaKnown RBP10.62□□□□□ -0.71
SS18-217ENST00000580958 COL4A3Q01955 1670 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 HEATR9A2RTY3 570 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 A6NNZ2 444 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 GOLGA8RI6L899 631 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 K7ERQ8 282 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 TK2O00142 265 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 SLC9A3R1O14745 358 aaPredicted RBP10.61□□□□□ -0.71
SS18-217ENST00000580958 PRPF4O43172 522 aaKnown RBP eCLIP10.61□□□□□ -0.71
SS18-217ENST00000580958 SMAD6O43541 496 aaKnown RBP10.61□□□□□ -0.71
SS18-217ENST00000580958 KRT37O76014 449 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 KRT38O76015 456 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 EPOP01588 193 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 F7P08709 466 aaPredicted RBP10.61□□□□□ -0.71
SS18-217ENST00000580958 TYRP14679 529 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 WEE1P30291 646 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 HLA-FP30511 346 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 GBP2P32456 591 aaPredicted RBP10.61□□□□□ -0.71
SS18-217ENST00000580958 LSP1P33241 339 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 BMP8BP34820 402 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 VIPR2P41587 438 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 CTSOP43234 321 aaPredicted RBP10.61□□□□□ -0.71
SS18-217ENST00000580958 TRAF2Q12933 501 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 SLC12A1Q13621 1099 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 TUBB8Q3ZCM7 444 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 FUT11Q495W5 492 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 HSP90AA5PQ58FG0 334 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 FAM78AQ5JUQ0 283 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 LY6G5CQ5SRR4 150 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 ATXN7L2Q5T6C5 722 aaPredicted RBP10.61□□□□□ -0.71
SS18-217ENST00000580958 TSTD2Q5T7W7 516 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 TEDDM1Q5T9Z0 273 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 LGSNQ5TDP6 509 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 PDPK2PQ6A1A2 396 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 ANKRD54Q6NXT1 300 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 NCEH1Q6PIU2 408 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 GET4Q7L5D6 327 aaPredicted RBP10.61□□□□□ -0.71
SS18-217ENST00000580958 GPR149Q86SP6 731 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 TDHQ8IZJ6 230 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 ATXN2LQ8WWM7 1075 aaKnown RBP10.61□□□□□ -0.71
SS18-217ENST00000580958 ATP2A3Q93084 1043 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 ACDQ96AP0 544 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 CENPTQ96BT3 561 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 OTUB2Q96DC9 234 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 SERAC1Q96JX3 654 aa10.61□□□□□ -0.71
SS18-217ENST00000580958 KCNK17Q96T54 332 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms