RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 LRRC61Q9BV99 259 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 TTYH3Q9C0H2 523 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 NOL6Q9H6R4 1146 aaKnown RBP21.35■■□□□ 1.01
VPS53-216ENST00000574029 TAB2Q9NYJ8 693 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 SSUH2Q9Y2M2 353 aa21.35■■□□□ 1.01
VPS53-216ENST00000574029 LMO7DNF2Z398 122 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 BUB1O43683 1085 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 MMP20O60882 483 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 TCEA3O75764 348 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 TM7SF2O76062 418 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 TMCC1O94876 653 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 UNGP13051 313 aaPredicted RBP21.34■■□□□ 1.01
VPS53-216ENST00000574029 SOX5P35711 763 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 RPIAP49247 311 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 KLK7P49862 253 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 ADKP55263 362 aaKnown RBP21.34■■□□□ 1.01
VPS53-216ENST00000574029 PRRT3Q5FWE3 981 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 LRRC73Q5JTD7 316 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 C6orf132Q5T0Z8 1188 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 RBM44Q6ZP01 1051 aaKnown RBP21.34■■□□□ 1.01
VPS53-216ENST00000574029 VPS36Q86VN1 386 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 TP53I13Q8NBR0 393 aaPredicted RBP21.34■■□□□ 1.01
VPS53-216ENST00000574029 GLMNQ92990 594 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 PRR11Q96HE9 360 aaPredicted RBP21.34■■□□□ 1.01
VPS53-216ENST00000574029 SLC46A1Q96NT5 459 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 C1QTNF7Q9BXJ2 289 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 CPNE5Q9HCH3 593 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 DKK3Q9UBP4 350 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 MFHAS1Q9Y4C4 1052 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 PCDHGA8Q9Y5G5 932 aa21.34■■□□□ 1.01
VPS53-216ENST00000574029 MUSKO15146 869 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 KLK10O43240 276 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 KRT3P12035 628 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 TIMP2P16035 220 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 RFC1P35251 1148 aaPredicted RBP21.33■■□□□ 1.01
VPS53-216ENST00000574029 POLR2FP61218 127 aaKnown RBP21.33■■□□□ 1.01
VPS53-216ENST00000574029 SKOR1P84550 965 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 RHDQ02161 417 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 CFHR1Q03591 330 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 RAD51Q06609 339 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 C1orf61Q13536 156 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 INO80DQ53TQ3 878 aaPredicted RBP21.33■■□□□ 1.01
VPS53-216ENST00000574029 MACC1Q6ZN28 852 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 SLC35F3Q8IY50 421 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 RTL3Q8N8U3 475 aaKnown RBP21.33■■□□□ 1.01
VPS53-216ENST00000574029 CXorf40AQ8TE69 158 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 NAT6Q93015 286 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 WBP1Q96G27 269 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 PCDHB18PQ96TA0 734 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 EPAS1Q99814 870 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 SLC13A1Q9BZW2 595 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 CLPBQ9H078 707 aa21.33■■□□□ 1.01
VPS53-216ENST00000574029 MBNL1Q9NR56 388 aaKnown RBP21.33■■□□□ 1.01
VPS53-216ENST00000574029 YY2O15391 372 aa21.32■■□□□ 1
VPS53-216ENST00000574029 IGSF6O95976 241 aa21.32■■□□□ 1
VPS53-216ENST00000574029 ANXA6P08133 673 aa21.32■■□□□ 1
VPS53-216ENST00000574029 ITIH2P19823 946 aa21.32■■□□□ 1
VPS53-216ENST00000574029 GPD1P21695 349 aa21.32■■□□□ 1
VPS53-216ENST00000574029 RBMS1P29558 406 aaKnown RBP21.32■■□□□ 1
VPS53-216ENST00000574029 EIF4A3P38919 411 aaKnown RBP21.32■■□□□ 1
VPS53-216ENST00000574029 C1QBPQ07021 282 aaKnown RBP21.32■■□□□ 1
VPS53-216ENST00000574029 FAXCQ5TGI0 409 aa21.32■■□□□ 1
VPS53-216ENST00000574029 CRTC1Q6UUV9 634 aa21.32■■□□□ 1
VPS53-216ENST00000574029 SLFN11Q7Z7L1 901 aa21.32■■□□□ 1
VPS53-216ENST00000574029 PYROXD2Q8N2H3 581 aa21.32■■□□□ 1
VPS53-216ENST00000574029 WDR48Q8TAF3 677 aa21.32■■□□□ 1
VPS53-216ENST00000574029 SNRNP27Q8WVK2 155 aaKnown RBP21.32■■□□□ 1
VPS53-216ENST00000574029 KLC2Q9H0B6 622 aa21.32■■□□□ 1
VPS53-216ENST00000574029 NUP62CLQ9H1M0 184 aa21.32■■□□□ 1
VPS53-216ENST00000574029 VPS16Q9H269 839 aa21.32■■□□□ 1
VPS53-216ENST00000574029 DAAM1Q9Y4D1 1078 aa21.32■■□□□ 1
VPS53-216ENST00000574029 LRRK1Q38SD2 2015 aa21.31■■□□□ 1
VPS53-216ENST00000574029 EPHB6O15197 1021 aa21.31■■□□□ 1
VPS53-216ENST00000574029 ZIC2O95409 532 aaPredicted RBP21.31■■□□□ 1
VPS53-216ENST00000574029 PLA2G2AP14555 144 aa21.31■■□□□ 1
VPS53-216ENST00000574029 TSHRP16473 764 aa21.31■■□□□ 1
VPS53-216ENST00000574029 YBEYP58557 167 aaPredicted RBP21.31■■□□□ 1
VPS53-216ENST00000574029 RHOAP61586 193 aa21.31■■□□□ 1
VPS53-216ENST00000574029 KLHL40Q2TBA0 621 aa21.31■■□□□ 1
VPS53-216ENST00000574029 TMEM52BQ4KMG9 183 aa21.31■■□□□ 1
VPS53-216ENST00000574029 ARHGAP40Q5TG30 622 aa21.31■■□□□ 1
VPS53-216ENST00000574029 CDKAL1Q5VV42 579 aa21.31■■□□□ 1
VPS53-216ENST00000574029 WDR59Q6PJI9 974 aa21.31■■□□□ 1
VPS53-216ENST00000574029 ZNF605Q86T29 641 aa21.31■■□□□ 1
VPS53-216ENST00000574029 ZNF354CQ86Y25 554 aa21.31■■□□□ 1
VPS53-216ENST00000574029 PHF13Q86YI8 300 aaPredicted RBP21.31■■□□□ 1
VPS53-216ENST00000574029 ENOX1Q8TC92 643 aaKnown RBP21.31■■□□□ 1
VPS53-216ENST00000574029 SELENOOQ9BVL4 669 aa21.31■■□□□ 1
VPS53-216ENST00000574029 CPEB1Q9BZB8 566 aaKnown RBP21.31■■□□□ 1
VPS53-216ENST00000574029 NLRC4Q9NPP4 1024 aa21.31■■□□□ 1
VPS53-216ENST00000574029 FAM207AQ9NSI2 230 aaPredicted RBP21.31■■□□□ 1
VPS53-216ENST00000574029 ADAM22Q9P0K1 906 aa21.31■■□□□ 1
VPS53-216ENST00000574029 RP1P56715 2156 aa21.3■■□□□ 1
VPS53-216ENST00000574029 LRP4O75096 1905 aa21.3■■□□□ 1
VPS53-216ENST00000574029 CAPN8A6NHC0 703 aa21.3■■□□□ 1
VPS53-216ENST00000574029 CDRT15L2A8MXV6 281 aa21.3■■□□□ 1
VPS53-216ENST00000574029 CASC3O15234 703 aaKnown RBP21.3■■□□□ 1
VPS53-216ENST00000574029 EPHB2P29323 1055 aa21.3■■□□□ 1
VPS53-216ENST00000574029 STAT1P42224 750 aa21.3■■□□□ 1
VPS53-216ENST00000574029 NSFP46459 744 aaKnown RBP21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms