RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 KCNMB2Q9Y691 235 aa18.32■□□□□ 0.52
CLK3-227ENST00000570296 ZNF821O75541 412 aaPredicted RBP18.31■□□□□ 0.52
CLK3-227ENST00000570296 RHOCP08134 193 aa18.31■□□□□ 0.52
CLK3-227ENST00000570296 PAEPP09466 180 aa18.31■□□□□ 0.52
CLK3-227ENST00000570296 PDCP20941 246 aa18.31■□□□□ 0.52
CLK3-227ENST00000570296 GRNP28799 593 aaKnown RBP18.31■□□□□ 0.52
CLK3-227ENST00000570296 PSMC2P35998 433 aaKnown RBP18.31■□□□□ 0.52
CLK3-227ENST00000570296 RABEP1Q15276 862 aa18.31■□□□□ 0.52
CLK3-227ENST00000570296 STILQ15468 1287 aa18.31■□□□□ 0.52
CLK3-227ENST00000570296 EDRF1Q3B7T1 1238 aa18.31■□□□□ 0.52
CLK3-227ENST00000570296 C5orf22Q49AR2 442 aa18.31■□□□□ 0.52
CLK3-227ENST00000570296 LINGO4Q6UY18 593 aa18.31■□□□□ 0.52
CLK3-227ENST00000570296 NLGN4XQ8N0W4 816 aa18.31■□□□□ 0.52
CLK3-227ENST00000570296 PCDH20Q8N6Y1 951 aaKnown RBP18.31■□□□□ 0.52
CLK3-227ENST00000570296 AGBL5Q8NDL9 886 aa18.31■□□□□ 0.52
CLK3-227ENST00000570296 NLGN4YQ8NFZ3 816 aaPredicted RBP18.31■□□□□ 0.52
CLK3-227ENST00000570296 EXOC1Q9NV70 894 aa18.31■□□□□ 0.52
CLK3-227ENST00000570296 VANGL2Q9ULK5 521 aa18.31■□□□□ 0.52
CLK3-227ENST00000570296 ITM2BQ9Y287 266 aa18.31■□□□□ 0.52
CLK3-227ENST00000570296 IGHV5-10-1A0A0J9YXX1 117 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 C16orf96A6NNT2 1141 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 KLRC4O43908 158 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 ENDOD1O94919 500 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 TCN2P20062 427 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 HTR1BP28222 390 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 CCR1P32246 355 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 RPL34P49207 117 aaKnown RBP18.3■□□□□ 0.52
CLK3-227ENST00000570296 NASPP49321 788 aaPredicted RBP18.3■□□□□ 0.52
CLK3-227ENST00000570296 CCNHP51946 323 aaPredicted RBP18.3■□□□□ 0.52
CLK3-227ENST00000570296 RAB15P59190 212 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 SRP54P61011 504 aaKnown RBP18.3■□□□□ 0.52
CLK3-227ENST00000570296 DCAF12Q5T6F0 453 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 RD3Q7Z3Z2 195 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 SLC34A3Q8N130 599 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 UBR7Q8N806 425 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 TP53I13Q8NBR0 393 aaPredicted RBP18.3■□□□□ 0.52
CLK3-227ENST00000570296 ATL2Q8NHH9 583 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 STARD8Q92502 1023 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 CCDC74BQ96LY2 380 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 TEFMQ96QE5 360 aaKnown RBP18.3■□□□□ 0.52
CLK3-227ENST00000570296 POPDC2Q9HBU9 364 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 MBNL1Q9NR56 388 aaKnown RBP18.3■□□□□ 0.52
CLK3-227ENST00000570296 FOXD4L1Q9NU39 408 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 SLC39A1Q9NY26 324 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 FAM13BQ9NYF5 915 aa18.3■□□□□ 0.52
CLK3-227ENST00000570296 LOC101059948A0A1B0GTJ6 334 aa18.29■□□□□ 0.52
CLK3-227ENST00000570296 ZW10O43264 779 aa18.29■□□□□ 0.52
CLK3-227ENST00000570296 STX10O60499 249 aa18.29■□□□□ 0.52
CLK3-227ENST00000570296 TM7SF2O76062 418 aa18.29■□□□□ 0.52
CLK3-227ENST00000570296 CD2BP2O95400 341 aaKnown RBP18.29■□□□□ 0.52
CLK3-227ENST00000570296 ABHD18Q0P651 414 aa18.29■□□□□ 0.52
CLK3-227ENST00000570296 NFATC4Q14934 902 aa18.29■□□□□ 0.52
CLK3-227ENST00000570296 CARD16Q5EG05 197 aa18.29■□□□□ 0.52
CLK3-227ENST00000570296 ENPP7Q6UWV6 458 aa18.29■□□□□ 0.52
CLK3-227ENST00000570296 FAM46DQ8NEK8 389 aa18.29■□□□□ 0.52
CLK3-227ENST00000570296 NUDT22Q9BRQ3 303 aa18.29■□□□□ 0.52
CLK3-227ENST00000570296 FAM204AQ9H8W3 233 aa18.29■□□□□ 0.52
CLK3-227ENST00000570296 KLQ9UEF7 1012 aa18.29■□□□□ 0.52
CLK3-227ENST00000570296 MAP4K5Q9Y4K4 846 aa18.29■□□□□ 0.52
CLK3-227ENST00000570296 DGKBQ9Y6T7 804 aa18.29■□□□□ 0.52
CLK3-227ENST00000570296 PCNX1Q96RV3 2341 aa18.29■□□□□ 0.52
CLK3-227ENST00000570296 B4E171 279 aa18.28■□□□□ 0.52
CLK3-227ENST00000570296 AREL1O15033 823 aa18.28■□□□□ 0.52
CLK3-227ENST00000570296 POLR2DO15514 142 aaKnown RBP18.28■□□□□ 0.52
CLK3-227ENST00000570296 B4GAT1O43505 415 aa18.28■□□□□ 0.52
CLK3-227ENST00000570296 LDLRP01130 860 aa18.28■□□□□ 0.52
CLK3-227ENST00000570296 CSTF2P33240 577 aaKnown RBP eCLIP18.28■□□□□ 0.52
CLK3-227ENST00000570296 TSPAN7P41732 249 aa18.28■□□□□ 0.52
CLK3-227ENST00000570296 SERPINH1P50454 418 aaKnown RBP18.28■□□□□ 0.52
CLK3-227ENST00000570296 LIMK2P53671 638 aa18.28■□□□□ 0.52
CLK3-227ENST00000570296 PITX1P78337 314 aaPredicted RBP18.28■□□□□ 0.52
CLK3-227ENST00000570296 STK38Q15208 465 aa18.28■□□□□ 0.52
CLK3-227ENST00000570296 AMZ1Q400G9 498 aa18.28■□□□□ 0.52
CLK3-227ENST00000570296 ZNF805Q5CZA5 627 aa18.28■□□□□ 0.52
CLK3-227ENST00000570296 RETSATQ6NUM9 610 aa18.28■□□□□ 0.52
CLK3-227ENST00000570296 ZNF438Q7Z4V0 828 aa18.28■□□□□ 0.52
CLK3-227ENST00000570296 SETD3Q86TU7 594 aaPredicted RBP18.28■□□□□ 0.52
CLK3-227ENST00000570296 ZSWIM1Q9BR11 485 aa18.28■□□□□ 0.52
CLK3-227ENST00000570296 SPRY4Q9C004 299 aa18.28■□□□□ 0.52
CLK3-227ENST00000570296 ZDHHC6Q9H6R6 413 aa18.28■□□□□ 0.52
CLK3-227ENST00000570296 TNFP01375 233 aa18.27■□□□□ 0.52
CLK3-227ENST00000570296 TBXAS1P24557 533 aaPredicted RBP18.27■□□□□ 0.52
CLK3-227ENST00000570296 RPL13P26373 211 aaKnown RBP18.27■□□□□ 0.52
CLK3-227ENST00000570296 ACADSBP45954 432 aa18.27■□□□□ 0.52
CLK3-227ENST00000570296 DNA2P51530 1060 aa18.27■□□□□ 0.52
CLK3-227ENST00000570296 YWHAZP63104 245 aaKnown RBP18.27■□□□□ 0.52
CLK3-227ENST00000570296 SLC20A2Q08357 652 aa18.27■□□□□ 0.52
CLK3-227ENST00000570296 NR1D2Q14995 579 aa18.27■□□□□ 0.52
CLK3-227ENST00000570296 IRF4Q15306 451 aa18.27■□□□□ 0.52
CLK3-227ENST00000570296 ATP1A1-AS1Q5TC04 95 aa18.27■□□□□ 0.52
CLK3-227ENST00000570296 C16orf46Q6P387 395 aa18.27■□□□□ 0.52
CLK3-227ENST00000570296 SHC4Q6S5L8 630 aa18.27■□□□□ 0.52
CLK3-227ENST00000570296 TIPARPQ7Z3E1 657 aaKnown RBP18.27■□□□□ 0.52
CLK3-227ENST00000570296 TAF8Q7Z7C8 310 aa18.27■□□□□ 0.52
CLK3-227ENST00000570296 LINC00301Q8NCQ3 95 aa18.27■□□□□ 0.52
CLK3-227ENST00000570296 TRIT1Q9H3H1 467 aaKnown RBP18.27■□□□□ 0.52
CLK3-227ENST00000570296 ST7Q9NRC1 585 aa18.27■□□□□ 0.52
CLK3-227ENST00000570296 HS3ST4Q9Y661 456 aa18.27■□□□□ 0.52
CLK3-227ENST00000570296 A0A0D9SEW6 157 aa18.26■□□□□ 0.51
CLK3-227ENST00000570296 B4DGG1 531 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms