RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 CSNK1DP48730 415 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 SIM1P81133 766 aaPredicted RBP13.18□□□□□ -0.3
CNOT1-220ENST00000569916 SLC10A7Q0GE19 358 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 MESDQ14696 234 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 LBRQ14739 615 aaKnown RBP13.18□□□□□ -0.3
CNOT1-220ENST00000569916 GRM3Q14832 879 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 PRAMEF14Q5SWL7 426 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 TMCO4Q5TGY1 634 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 NCBP2-AS2Q69YL0 99 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 SRLQ86TD4 932 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 ZSCAN30Q86W11 494 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 RHOT2Q8IXI1 618 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 PCDH19Q8TAB3 1148 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 SETD7Q8WTS6 366 aaKnown RBP13.18□□□□□ -0.3
CNOT1-220ENST00000569916 FAF2Q96CS3 445 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 FEM1CQ96JP0 617 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 TUBGCP5Q96RT8 1024 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 ZNF670Q9BS34 389 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 C1QTNF2Q9BXJ5 285 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 SLC17A9Q9BYT1 436 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 ERVMER34-1Q9H9K5 563 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 INTUQ9ULD6 942 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 KNL1Q8NG31 2342 aa13.18□□□□□ -0.3
CNOT1-220ENST00000569916 IGLON5A6NGN9 336 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 NEMP1O14524 444 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 RAD51BO15315 384 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 BUB1BO60566 1050 aaPredicted RBP13.17□□□□□ -0.3
CNOT1-220ENST00000569916 MAGEC1O60732 1142 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 PAK4O96013 591 aaPredicted RBP13.17□□□□□ -0.3
CNOT1-220ENST00000569916 KRT7P08729 469 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 THEGLP0DJG4 465 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 TIMP2P16035 220 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 ITIH2P19823 946 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 EPHA8P29322 1005 aaPredicted RBP13.17□□□□□ -0.3
CNOT1-220ENST00000569916 ARHGAP25P42331 645 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 CLDN2P57739 230 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 NSUN2Q08J23 767 aaKnown RBP eCLIP13.17□□□□□ -0.3
CNOT1-220ENST00000569916 SUZ12Q15022 739 aaKnown RBP13.17□□□□□ -0.3
CNOT1-220ENST00000569916 PAFAH1B3Q15102 231 aaKnown RBP13.17□□□□□ -0.3
CNOT1-220ENST00000569916 PDK2Q15119 407 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 TCEAL1Q15170 157 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 TRIP6Q15654 476 aaKnown RBP13.17□□□□□ -0.3
CNOT1-220ENST00000569916 ANKRD20A8PQ5CZ79 823 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 ABI3BPQ7Z7G0 1075 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 TTC7BQ86TV6 843 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 ZSWIM9Q86XI8 627 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 GATAD2AQ86YP4 633 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 CAMK1DQ8IU85 385 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 OXR1Q8N573 874 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 ATPAF2Q8N5M1 289 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 KCTD6Q8NC69 237 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 OR13H1Q8NG92 308 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 HCAR2Q8TDS4 363 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 KLHDC7BQ96G42 594 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 NSMCE3Q96MG7 304 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 ZNF641Q96N77 438 aaPredicted RBP13.17□□□□□ -0.3
CNOT1-220ENST00000569916 PSKH2Q96QS6 385 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 KLF6Q99612 283 aaPredicted RBP13.17□□□□□ -0.3
CNOT1-220ENST00000569916 CALN1Q9BXU9 219 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 SUV39H2Q9H5I1 410 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 SEPT3Q9UH03 358 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 WASF3Q9UPY6 502 aa13.17□□□□□ -0.3
CNOT1-220ENST00000569916 A6NNZ2 444 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 YKT6O15498 198 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 LCA5LO95447 670 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 TOP3BO95985 862 aaKnown RBP13.16□□□□□ -0.3
CNOT1-220ENST00000569916 SERPINA4P29622 427 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 RXRGP48443 463 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 RENBPP51606 427 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 SUOXP51687 545 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 AP1S1P61966 158 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 SHC2P98077 582 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 FOXC1Q12948 553 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 ZNF235Q14590 738 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 BRAT1Q6PJG6 821 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 KYAT3Q6YP21 454 aaKnown RBP13.16□□□□□ -0.3
CNOT1-220ENST00000569916 GLRX5Q86SX6 157 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 SLC22A18ASQ8N1D0 253 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 PGBD5Q8N414 524 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 PQLC3Q8N755 202 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 SAP25Q8TEE9 199 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 ASB12Q8WXK4 309 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 RAPGEF5Q92565 580 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 ECHDC3Q96DC8 303 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 BMFQ96LC9 184 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 LENG8Q96PV6 779 aaPredicted RBP13.16□□□□□ -0.3
CNOT1-220ENST00000569916 ATP13A3Q9H7F0 1226 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 GPR27Q9NS67 375 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 ANGPTL2Q9UKU9 493 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 PCDHB9Q9Y5E1 797 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 HS3ST3A1Q9Y663 406 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 CABIN1Q9Y6J0 2220 aa13.16□□□□□ -0.3
CNOT1-220ENST00000569916 PTPRBP23467 1997 aa13.15□□□□□ -0.3
CNOT1-220ENST00000569916 POM121BA6NF01 834 aa13.15□□□□□ -0.3
CNOT1-220ENST00000569916 MMP20O60882 483 aa13.15□□□□□ -0.3
CNOT1-220ENST00000569916 MAP3K6O95382 1288 aa13.15□□□□□ -0.3
CNOT1-220ENST00000569916 CR2P20023 1033 aa13.15□□□□□ -0.3
CNOT1-220ENST00000569916 FECHP22830 423 aa13.15□□□□□ -0.3
CNOT1-220ENST00000569916 XPAP23025 273 aaPredicted RBP13.15□□□□□ -0.3
CNOT1-220ENST00000569916 KDELR1P24390 212 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms