RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	NEUROG2	Q9H2A3	272 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	SUV39H2	Q9H5I1	410 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	ATP13A3	Q9H7F0	1226 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	DKK3	Q9UBP4	350 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	MBD1	Q9UIS9	605 aa	Predicted RBP	18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	TRHDE	Q9UKU6	1024 aa		18.18	■□□□□ 0.5
COMMD4-222	ENST00000568034	WDFY4	Q6ZS81	3184 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	C16orf96	A6NNT2	1141 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034		H0Y858	1186 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	SPINT1	O43278	529 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	HR	O43593	1189 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	FZD6	O60353	706 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	SOCS5	O75159	536 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	ZNF217	O75362	1048 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	ZNF189	O75820	626 aa	Predicted RBP	18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	ACADM	P11310	421 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	BCKDHB	P21953	392 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	SERPINA4	P29622	427 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	CD86	P42081	329 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	ABL2	P42684	1182 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	TAS2R38	P59533	333 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	BCL2L1	Q07817	233 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	ERN2	Q76MJ5	926 aa	Known RBP	18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	PID1	Q7Z2X4	250 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	GLIS1	Q8NBF1	620 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	SPATA22	Q8NHS9	363 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	SPOCK2	Q92563	424 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	FCRL5	Q96RD9	977 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	GBA3	Q9H227	469 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	HOMER3	Q9NSC5	361 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	HAUS2	Q9NVX0	235 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	FZD4	Q9ULV1	537 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	INVS	Q9Y283	1065 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	DRG1	Q9Y295	367 aa	Known RBP	18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	PCDHGC4	Q9Y5F7	938 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	PCDHGA2	Q9Y5H1	932 aa		18.17	■□□□□ 0.5
COMMD4-222	ENST00000568034	USP34	Q70CQ2	3546 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	OPHN1	O60890	802 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	GCAT	O75600	419 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	RNASEH2A	O75792	299 aa	Known RBP	18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	MT-CYB	P00156	380 aa	Predicted RBP	18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	PRL	P01236	227 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	TUBB4A	P04350	444 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	TIMP2	P16035	220 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	CES1	P23141	567 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	STIP1	P31948	543 aa	Known RBP	18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	ACSL1	P33121	698 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	DEK	P35659	375 aa	Known RBP	18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	SLC14A2	Q15849	920 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	KCTD19	Q17RG1	926 aa	Predicted RBP	18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	USP39	Q53GS9	565 aa	Known RBP	18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	PRUNE1	Q86TP1	453 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	FAM124A	Q86V42	546 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	KBTBD6	Q86V97	674 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	KLHDC8B	Q8IXV7	354 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	HCAR2	Q8TDS4	363 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	GAB3	Q8WWW8	586 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	OXNAD1	Q96HP4	312 aa	Predicted RBP	18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	PPP1R16A	Q96I34	528 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	RBM15	Q96T37	977 aa	Known RBP eCLIP	18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	TDRD1	Q9BXT4	1180 aa	Known RBP	18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	WSB2	Q9NYS7	404 aa	Predicted RBP	18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	RNF14	Q9UBS8	474 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	ZNF148	Q9UQR1	794 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034	RAI2	Q9Y5P3	530 aa		18.16	■□□□□ 0.5
COMMD4-222	ENST00000568034		F5H423	210 aa	Predicted RBP	18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	KIF2A	O00139	706 aa	Predicted RBP	18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	SLC7A4	O43246	635 aa		18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	PHF2	O75151	1096 aa		18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	PGLS	O95336	258 aa		18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	SERPINF2	P08697	491 aa		18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	ADRB3	P13945	408 aa		18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	ETS1	P14921	441 aa		18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	PSMB4	P28070	264 aa		18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	CD6	P30203	668 aa		18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	COIL	P38432	576 aa	Predicted RBP	18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	NEK3	P51956	506 aa		18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	ADPRH	P54922	357 aa		18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	P3H1	Q32P28	736 aa		18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	KDELC1	Q6UW63	502 aa		18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	MAGOHB	Q96A72	148 aa	Known RBP	18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	TOE1	Q96GM8	510 aa	Known RBP	18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	OMD	Q99983	421 aa		18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	MLPH	Q9BV36	600 aa	Predicted RBP	18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	KCNH6	Q9H252	994 aa		18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	RSPH14	Q9UHP6	348 aa		18.15	■□□□□ 0.5
COMMD4-222	ENST00000568034	ABCA7	Q8IZY2	2146 aa		18.14	■□□□□ 0.5
COMMD4-222	ENST00000568034	PLRG1	O43660	514 aa	Known RBP	18.14	■□□□□ 0.49
COMMD4-222	ENST00000568034	RPP40	O75818	363 aa	Known RBP	18.14	■□□□□ 0.49
COMMD4-222	ENST00000568034	STK10	O94804	968 aa	Known RBP	18.14	■□□□□ 0.49
COMMD4-222	ENST00000568034	METTL18	O95568	372 aa		18.14	■□□□□ 0.49
COMMD4-222	ENST00000568034	PDHA1	P08559	390 aa		18.14	■□□□□ 0.49
COMMD4-222	ENST00000568034	ZSCAN5DP	P0CG00	497 aa		18.14	■□□□□ 0.49
COMMD4-222	ENST00000568034	OXTR	P30559	389 aa		18.14	■□□□□ 0.49
COMMD4-222	ENST00000568034	LRRC73	Q5JTD7	316 aa		18.14	■□□□□ 0.49
COMMD4-222	ENST00000568034	ITPRIPL1	Q6GPH6	555 aa		18.14	■□□□□ 0.49
COMMD4-222	ENST00000568034	BRAT1	Q6PJG6	821 aa		18.14	■□□□□ 0.49
COMMD4-222	ENST00000568034	GANC	Q8TET4	914 aa		18.14	■□□□□ 0.49

Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms