RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 FSBPO95073 299 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 CXCR5P32302 372 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 PLA2G5P39877 138 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 NEK3P51956 506 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 SEMG2Q02383 582 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 CREB5Q02930 508 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 RAD51Q06609 339 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 ITKQ08881 620 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 TRAF2Q12933 501 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 CCDC181Q5TID7 509 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 ADAT2Q7Z6V5 191 aaKnown RBP19.76■□□□□ 0.75
CLN3-225ENST00000566824 OR2T34Q8NGX1 318 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 TFB1MQ8WVM0 346 aaKnown RBP19.76■□□□□ 0.75
CLN3-225ENST00000566824 BIRC7Q96CA5 298 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 ORAI3Q9BRQ5 295 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 OSBPL1AQ9BXW6 950 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 PARD6AQ9NPB6 346 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 DYRK4Q9NR20 520 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 TTLL3Q9Y4R7 772 aa19.76■□□□□ 0.75
CLN3-225ENST00000566824 ADAMTS9Q9P2N4 1935 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 TBC1D3DA0A087WVF3 549 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 TBC1D3IA0A087WXS9 549 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 TBC1D3EA0A087X179 549 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 TBC1D3KA0A087X1G2 549 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 TSPAN11A1L157 253 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 BCLAF3A2AJT9 711 aaKnown RBP19.75■□□□□ 0.75
CLN3-225ENST00000566824 TBC1D3FA6NER0 549 aaPredicted RBP19.75■□□□□ 0.75
CLN3-225ENST00000566824 TBC1D3LB9A6J9 549 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 SLC7A4O43246 635 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 TJP3O95049 919 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 MMP2P08253 660 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 TBC1D3HP0C7X1 549 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 PTPN3P26045 913 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 RBL1P28749 1068 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 HSPA9P38646 679 aaKnown RBP19.75■□□□□ 0.75
CLN3-225ENST00000566824 CETN2P41208 172 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 EIF3EP60228 445 aaKnown RBP19.75■□□□□ 0.75
CLN3-225ENST00000566824 AP1S1P61966 158 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 PTPRRQ15256 657 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 SLC45A4Q5BKX6 768 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 LYSMD4Q5XG99 296 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 KIAA0895LQ68EN5 471 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 TBC1D3GQ6DHY5 549 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 ALG1LQ6GMV1 187 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 TBC1D3CQ6IPX1 549 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 FBXL19Q6PCT2 694 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 TBC1D3Q8IZP1 549 aaPredicted RBP19.75■□□□□ 0.75
CLN3-225ENST00000566824 CADM4Q8NFZ8 388 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 PIGKQ92643 395 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 FAM122AQ96E09 287 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 PPP1R16AQ96I34 528 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 AGAP3Q96P47 875 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 TUBGCP5Q96RT8 1024 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 BRD8Q9H0E9 1235 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 ATP13A3Q9H7F0 1226 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.75■□□□□ 0.75
CLN3-225ENST00000566824 FADS3Q9Y5Q0 445 aa19.75■□□□□ 0.75
CLN3-225ENST00000566824 PIEZO1Q92508 2521 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 PATE3B3GLJ2 98 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 H7C0C1 242 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 GFRA3O60609 400 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 ATP1A1P05023 1023 aaKnown RBP19.74■□□□□ 0.75
CLN3-225ENST00000566824 RETP07949 1114 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 TGM1P22735 817 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 ATP5OP48047 213 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 BCL2L1Q07817 233 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 SFSWAPQ12872 951 aaKnown RBP19.74■□□□□ 0.75
CLN3-225ENST00000566824 SPDYCQ5MJ68 293 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 BZW1Q7L1Q6 419 aaKnown RBP19.74■□□□□ 0.75
CLN3-225ENST00000566824 CYP2U1Q7Z449 544 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 SLC13A5Q86YT5 568 aaPredicted RBP19.74■□□□□ 0.75
CLN3-225ENST00000566824 BBS5Q8N3I7 341 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 ATG4AQ8WYN0 398 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 KLK6Q92876 244 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 ECHDC3Q96DC8 303 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 LOXL4Q96JB6 756 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 ZNF641Q96N77 438 aaPredicted RBP19.74■□□□□ 0.75
CLN3-225ENST00000566824 SMIM14Q96QK8 99 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 POLR1EQ9GZS1 481 aaKnown RBP19.74■□□□□ 0.75
CLN3-225ENST00000566824 CARD9Q9H257 536 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 DKK3Q9UBP4 350 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 EIF2B4Q9UI10 523 aaKnown RBP19.74■□□□□ 0.75
CLN3-225ENST00000566824 PILRBQ9UKJ0 227 aa19.74■□□□□ 0.75
CLN3-225ENST00000566824 ZFR2Q9UPR6 939 aaKnown RBP19.74■□□□□ 0.75
CLN3-225ENST00000566824 LRRC72A6NJI9 287 aa19.73■□□□□ 0.75
CLN3-225ENST00000566824 MEI4A8MW99 385 aa19.73■□□□□ 0.75
CLN3-225ENST00000566824 F5H423 210 aaPredicted RBP19.73■□□□□ 0.75
CLN3-225ENST00000566824 WNT9AO14904 365 aa19.73■□□□□ 0.75
CLN3-225ENST00000566824 RNGTTO60942 597 aaKnown RBP19.73■□□□□ 0.75
CLN3-225ENST00000566824 RBP3P10745 1247 aa19.73■□□□□ 0.75
CLN3-225ENST00000566824 SERPINA4P29622 427 aa19.73■□□□□ 0.75
CLN3-225ENST00000566824 MAT2AP31153 395 aaKnown RBP19.73■□□□□ 0.75
CLN3-225ENST00000566824 CD68P34810 354 aaPredicted RBP19.73■□□□□ 0.75
CLN3-225ENST00000566824 SPEM2Q0P670 501 aa19.73■□□□□ 0.75
CLN3-225ENST00000566824 XRCC4Q13426 336 aa19.73■□□□□ 0.75
CLN3-225ENST00000566824 SIX1Q15475 284 aaPredicted RBP19.73■□□□□ 0.75
CLN3-225ENST00000566824 TEX44Q53QW1 395 aa19.73■□□□□ 0.75
CLN3-225ENST00000566824 SEL1L2Q5TEA6 688 aa19.73■□□□□ 0.75
CLN3-225ENST00000566824 SEL1L3Q68CR1 1132 aa19.73■□□□□ 0.75
CLN3-225ENST00000566824 TCEAL6Q6IPX3 200 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms