RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 NFS1Q9Y697 457 aa30.89■■■□□ 2.54
CTCF-203ENST00000566078 UNC80Q8N2C7 3258 aa30.89■■■□□ 2.54
CTCF-203ENST00000566078 TCF20Q9UGU0 1960 aaKnown RBP30.89■■■□□ 2.54
CTCF-203ENST00000566078 A0A087WUV0 522 aaPredicted RBP30.88■■■□□ 2.53
CTCF-203ENST00000566078 ATP9BO43861 1147 aa30.88■■■□□ 2.53
CTCF-203ENST00000566078 GSRP00390 522 aa30.88■■■□□ 2.53
CTCF-203ENST00000566078 SRPRAP08240 638 aaKnown RBP30.88■■■□□ 2.53
CTCF-203ENST00000566078 ATXN1LP0C7T5 689 aaKnown RBP30.88■■■□□ 2.53
CTCF-203ENST00000566078 TSHRP16473 764 aa30.88■■■□□ 2.53
CTCF-203ENST00000566078 PHBP35232 272 aa30.88■■■□□ 2.53
CTCF-203ENST00000566078 EIF2DP41214 584 aaKnown RBP30.88■■■□□ 2.53
CTCF-203ENST00000566078 CSNK1DP48730 415 aa30.88■■■□□ 2.53
CTCF-203ENST00000566078 SNRPD1P62314 119 aaKnown RBP30.88■■■□□ 2.53
CTCF-203ENST00000566078 IFFO1Q0D2I5 559 aa30.88■■■□□ 2.53
CTCF-203ENST00000566078 SIRPB2Q5JXA9 342 aa30.88■■■□□ 2.53
CTCF-203ENST00000566078 RYBPQ8N488 228 aaPredicted RBP30.88■■■□□ 2.53
CTCF-203ENST00000566078 TRIM56Q9BRZ2 755 aaKnown RBP30.88■■■□□ 2.53
CTCF-203ENST00000566078 ARNT2Q9HBZ2 717 aa30.88■■■□□ 2.53
CTCF-203ENST00000566078 PCDHGC4Q9Y5F7 938 aa30.88■■■□□ 2.53
CTCF-203ENST00000566078 NNMTP40261 264 aa30.87■■■□□ 2.53
CTCF-203ENST00000566078 TRAF2Q12933 501 aa30.87■■■□□ 2.53
CTCF-203ENST00000566078 GALNT3Q14435 633 aa30.87■■■□□ 2.53
CTCF-203ENST00000566078 PTPRNQ16849 979 aa30.87■■■□□ 2.53
CTCF-203ENST00000566078 PLCD3Q8N3E9 789 aa30.87■■■□□ 2.53
CTCF-203ENST00000566078 TRIB3Q96RU7 358 aa30.87■■■□□ 2.53
CTCF-203ENST00000566078 CHKBQ9Y259 395 aa30.87■■■□□ 2.53
CTCF-203ENST00000566078 BNIP3LO60238 219 aa30.87■■■□□ 2.53
CTCF-203ENST00000566078 PGAM1P18669 254 aa30.87■■■□□ 2.53
CTCF-203ENST00000566078 HLA-DPA1P20036 260 aa30.87■■■□□ 2.53
CTCF-203ENST00000566078 MAPK8P45983 427 aa30.87■■■□□ 2.53
CTCF-203ENST00000566078 SOX9P48436 509 aa30.87■■■□□ 2.53
CTCF-203ENST00000566078 EIF4HQ15056 248 aaKnown RBP30.87■■■□□ 2.53
CTCF-203ENST00000566078 SMAD2Q15796 467 aaKnown RBP30.87■■■□□ 2.53
CTCF-203ENST00000566078 UNC5AQ6ZN44 842 aa30.87■■■□□ 2.53
CTCF-203ENST00000566078 C3orf62Q6ZUJ4 267 aa30.87■■■□□ 2.53
CTCF-203ENST00000566078 NAT9Q9BTE0 207 aa30.87■■■□□ 2.53
CTCF-203ENST00000566078 LIMD1Q9UGP4 676 aa30.87■■■□□ 2.53
CTCF-203ENST00000566078 AGPSO00116 658 aa30.86■■■□□ 2.53
CTCF-203ENST00000566078 NDST3O95803 873 aa30.86■■■□□ 2.53
CTCF-203ENST00000566078 EPOP01588 193 aa30.86■■■□□ 2.53
CTCF-203ENST00000566078 FGF1P05230 155 aa30.86■■■□□ 2.53
CTCF-203ENST00000566078 CA4P22748 312 aa30.86■■■□□ 2.53
CTCF-203ENST00000566078 EIF3BP55884 814 aaKnown RBP30.86■■■□□ 2.53
CTCF-203ENST00000566078 POU6F1Q14863 301 aa30.86■■■□□ 2.53
CTCF-203ENST00000566078 LEXMQ3ZCV2 418 aa30.86■■■□□ 2.53
CTCF-203ENST00000566078 Q6ZVU0 165 aa30.86■■■□□ 2.53
CTCF-203ENST00000566078 MYO19Q96H55 970 aa30.86■■■□□ 2.53
CTCF-203ENST00000566078 KCNK12Q9HB15 430 aa30.86■■■□□ 2.53
CTCF-203ENST00000566078 TTC34A8MYJ7 566 aa30.85■■■□□ 2.53
CTCF-203ENST00000566078 SPAG6O75602 509 aa30.85■■■□□ 2.53
CTCF-203ENST00000566078 VASPP50552 380 aaPredicted RBP30.85■■■□□ 2.53
CTCF-203ENST00000566078 ST8SIA6P61647 398 aa30.85■■■□□ 2.53
CTCF-203ENST00000566078 ZNF844Q08AG5 666 aa30.85■■■□□ 2.53
CTCF-203ENST00000566078 CARD16Q5EG05 197 aa30.85■■■□□ 2.53
CTCF-203ENST00000566078 CCNJLQ8IV13 435 aa30.85■■■□□ 2.53
CTCF-203ENST00000566078 SFTPA1Q8IWL2 248 aa30.85■■■□□ 2.53
CTCF-203ENST00000566078 PDCD6IPQ8WUM4 868 aaKnown RBP30.85■■■□□ 2.53
CTCF-203ENST00000566078 PLAC1Q9HBJ0 212 aa30.85■■■□□ 2.53
CTCF-203ENST00000566078 HECAQ9UBI9 543 aaPredicted RBP30.85■■■□□ 2.53
CTCF-203ENST00000566078 SLC8A2Q9UPR5 921 aa30.85■■■□□ 2.53
CTCF-203ENST00000566078 ARIH1Q9Y4X5 557 aaPredicted RBP30.85■■■□□ 2.53
CTCF-203ENST00000566078 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP30.84■■■□□ 2.53
CTCF-203ENST00000566078 TBC1D3BA6NDS4 549 aa30.84■■■□□ 2.53
CTCF-203ENST00000566078 PIGNO95427 931 aa30.84■■■□□ 2.53
CTCF-203ENST00000566078 GKP32189 559 aa30.84■■■□□ 2.53
CTCF-203ENST00000566078 PREPLQ4J6C6 727 aaPredicted RBP30.84■■■□□ 2.53
CTCF-203ENST00000566078 CEP85LQ5SZL2 805 aa30.84■■■□□ 2.53
CTCF-203ENST00000566078 PPHLN1Q8NEY8 458 aaKnown RBP30.84■■■□□ 2.53
CTCF-203ENST00000566078 FBF1Q8TES7 1133 aa30.84■■■□□ 2.53
CTCF-203ENST00000566078 SOX13Q9UN79 622 aa30.84■■■□□ 2.53
CTCF-203ENST00000566078 PLA2G4CQ9UP65 541 aa30.84■■■□□ 2.53
CTCF-203ENST00000566078 TIMM44O43615 452 aa30.84■■■□□ 2.53
CTCF-203ENST00000566078 KAT7O95251 611 aa30.84■■■□□ 2.53
CTCF-203ENST00000566078 GSTA2P09210 222 aa30.84■■■□□ 2.53
CTCF-203ENST00000566078 STEAP4Q687X5 459 aa30.84■■■□□ 2.53
CTCF-203ENST00000566078 PTCRAQ6ISU1 281 aaPredicted RBP30.84■■■□□ 2.53
CTCF-203ENST00000566078 FRS2Q8WU20 508 aa30.84■■■□□ 2.53
CTCF-203ENST00000566078 APODP05090 189 aa30.83■■■□□ 2.53
CTCF-203ENST00000566078 CCNHP51946 323 aaPredicted RBP30.83■■■□□ 2.53
CTCF-203ENST00000566078 BCL2L1Q07817 233 aa30.83■■■□□ 2.53
CTCF-203ENST00000566078 MYLK3Q32MK0 819 aa30.83■■■□□ 2.53
CTCF-203ENST00000566078 PCID2Q5JVF3 399 aa30.83■■■□□ 2.53
CTCF-203ENST00000566078 LPCAT1Q8NF37 534 aa30.83■■■□□ 2.53
CTCF-203ENST00000566078 GSDMBQ8TAX9 411 aa30.83■■■□□ 2.53
CTCF-203ENST00000566078 ATP13A3Q9H7F0 1226 aa30.83■■■□□ 2.53
CTCF-203ENST00000566078 TCRBV9S1A1TA0A576 114 aa30.82■■■□□ 2.52
CTCF-203ENST00000566078 PRLP01236 227 aa30.82■■■□□ 2.52
CTCF-203ENST00000566078 POLBP06746 335 aa30.82■■■□□ 2.52
CTCF-203ENST00000566078 PDHA1P08559 390 aa30.82■■■□□ 2.52
CTCF-203ENST00000566078 GRIA2P42262 883 aa30.82■■■□□ 2.52
CTCF-203ENST00000566078 RECQLP46063 649 aaPredicted RBP30.82■■■□□ 2.52
CTCF-203ENST00000566078 SEPT6Q14141 434 aa30.82■■■□□ 2.52
CTCF-203ENST00000566078 CRYMQ14894 314 aa30.82■■■□□ 2.52
CTCF-203ENST00000566078 FNDC3BQ53EP0 1204 aaKnown RBP30.82■■■□□ 2.52
CTCF-203ENST00000566078 DPY19L3Q6ZPD9 716 aa30.82■■■□□ 2.52
CTCF-203ENST00000566078 CAMK1DQ8IU85 385 aa30.82■■■□□ 2.52
CTCF-203ENST00000566078 SLC44A3Q8N4M1 653 aa30.82■■■□□ 2.52
CTCF-203ENST00000566078 UCMAQ8WVF2 138 aa30.82■■■□□ 2.52
CTCF-203ENST00000566078 ZNF669Q96BR6 464 aaPredicted RBP30.82■■■□□ 2.52
CTCF-203ENST00000566078 RMDN1Q96DB5 314 aa30.82■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms