RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PIGNO95427 931 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 GYPCP04921 128 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 C1SP09871 688 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 CKMT2P17540 419 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 IL1R2P27930 398 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 CASP14P31944 242 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 ARL4AP40617 200 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 RABIFP47224 123 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 SMTNL2Q2TAL5 461 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 CFAP58Q5T655 872 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 ALKBH5Q6P6C2 394 aaKnown RBP20.97■□□□□ 0.95
CLN3-219ENST00000565778 KYAT3Q6YP21 454 aaKnown RBP20.97■□□□□ 0.95
CLN3-219ENST00000565778 ARHGAP12Q8IWW6 846 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 SLC22A18ASQ8N1D0 253 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 LZTR1Q8N653 840 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 IFT43Q96FT9 208 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 KLF6Q99612 283 aaPredicted RBP20.97■□□□□ 0.95
CLN3-219ENST00000565778 XPO4Q9C0E2 1151 aaKnown RBP20.97■□□□□ 0.95
CLN3-219ENST00000565778 SP110Q9HB58 689 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 UCKL1Q9NWZ5 548 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 IP6K2Q9UHH9 426 aa20.97■□□□□ 0.95
CLN3-219ENST00000565778 FAM149AA5PLN7 773 aa20.96■□□□□ 0.95
CLN3-219ENST00000565778 SPINT1O43278 529 aa20.96■□□□□ 0.95
CLN3-219ENST00000565778 RFPL3O75679 317 aa20.96■□□□□ 0.95
CLN3-219ENST00000565778 TM7SF2O76062 418 aa20.96■□□□□ 0.95
CLN3-219ENST00000565778 CDK4P11802 303 aa20.96■□□□□ 0.95
CLN3-219ENST00000565778 SSR1P43307 286 aaKnown RBP20.96■□□□□ 0.95
CLN3-219ENST00000565778 SMAD1Q15797 465 aaKnown RBP20.96■□□□□ 0.95
CLN3-219ENST00000565778 AFMIDQ63HM1 303 aa20.96■□□□□ 0.95
CLN3-219ENST00000565778 SRLQ86TD4 932 aa20.96■□□□□ 0.95
CLN3-219ENST00000565778 TSEN2Q8NCE0 465 aaKnown RBP20.96■□□□□ 0.95
CLN3-219ENST00000565778 HCAR2Q8TDS4 363 aa20.96■□□□□ 0.95
CLN3-219ENST00000565778 TSC1Q92574 1164 aa20.96■□□□□ 0.95
CLN3-219ENST00000565778 BTBD6Q96KE9 485 aa20.96■□□□□ 0.95
CLN3-219ENST00000565778 ZNF641Q96N77 438 aaPredicted RBP20.96■□□□□ 0.95
CLN3-219ENST00000565778 WRAP53Q9BUR4 548 aaKnown RBP20.96■□□□□ 0.95
CLN3-219ENST00000565778 NUP85Q9BW27 656 aa20.96■□□□□ 0.95
CLN3-219ENST00000565778 C1QTNF7Q9BXJ2 289 aa20.96■□□□□ 0.95
CLN3-219ENST00000565778 ANAPC7Q9UJX3 599 aa20.96■□□□□ 0.95
CLN3-219ENST00000565778 AKAP13Q12802 2813 aa20.96■□□□□ 0.95
CLN3-219ENST00000565778 MYO1FO00160 1098 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 TRIM38O00635 465 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 FFAR2O15552 330 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 SIGLEC6O43699 453 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 BUB1BO60566 1050 aaPredicted RBP20.95■□□□□ 0.94
CLN3-219ENST00000565778 PIAS2O75928 621 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 CYP1A2P05177 515 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 RARAP10276 462 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 TCF4P15884 667 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 AMPD1P23109 780 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 SUOXP51687 545 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 HNRNPKP61978 463 aaKnown RBP eCLIP20.95■□□□□ 0.94
CLN3-219ENST00000565778 IL10RBQ08334 325 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 ELP6Q0PNE2 266 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 ZNF211Q13398 564 aaPredicted RBP20.95■□□□□ 0.94
CLN3-219ENST00000565778 DPYSQ14117 519 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 PDE1CQ14123 709 aaPredicted RBP20.95■□□□□ 0.94
CLN3-219ENST00000565778 FZD2Q14332 565 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 ARHGAP36Q6ZRI8 547 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 TMPRSS12Q86WS5 348 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 NPWQ8N729 165 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 PAF1Q8N7H5 531 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 CENPTQ96BT3 561 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 CINPQ9BW66 212 aaPredicted RBP20.95■□□□□ 0.94
CLN3-219ENST00000565778 CCDC86Q9H6F5 360 aaKnown RBP20.95■□□□□ 0.94
CLN3-219ENST00000565778 CAAP1Q9H8G2 361 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.95■□□□□ 0.94
CLN3-219ENST00000565778 TRPM6Q9BX84 2022 aa20.95■□□□□ 0.94
CLN3-219ENST00000565778 TP53BP1Q12888 1972 aaPredicted RBP20.94■□□□□ 0.94
CLN3-219ENST00000565778 SPTY2D1-AS1A0A0U1RR47 76 aa20.94■□□□□ 0.94
CLN3-219ENST00000565778 NEMP2A6NFY4 417 aa20.94■□□□□ 0.94
CLN3-219ENST00000565778 SRRM3A6NNA2 597 aaPredicted RBP20.94■□□□□ 0.94
CLN3-219ENST00000565778 JUPP14923 745 aa20.94■□□□□ 0.94
CLN3-219ENST00000565778 CSNK1DP48730 415 aa20.94■□□□□ 0.94
CLN3-219ENST00000565778 ACADVLP49748 655 aa20.94■□□□□ 0.94
CLN3-219ENST00000565778 RFTN1Q14699 578 aaPredicted RBP20.94■□□□□ 0.94
CLN3-219ENST00000565778 DPYSL2Q16555 572 aa20.94■□□□□ 0.94
CLN3-219ENST00000565778 UGP2Q16851 508 aa20.94■□□□□ 0.94
CLN3-219ENST00000565778 POLNQ7Z5Q5 900 aa20.94■□□□□ 0.94
CLN3-219ENST00000565778 CAMK1DQ8IU85 385 aa20.94■□□□□ 0.94
CLN3-219ENST00000565778 TP53INP2Q8IXH6 220 aa20.94■□□□□ 0.94
CLN3-219ENST00000565778 DENND6BQ8NEG7 585 aa20.94■□□□□ 0.94
CLN3-219ENST00000565778 TUBGCP5Q96RT8 1024 aa20.94■□□□□ 0.94
CLN3-219ENST00000565778 ATP13A3Q9H7F0 1226 aa20.94■□□□□ 0.94
CLN3-219ENST00000565778 CACNA1BQ00975 2339 aa20.94■□□□□ 0.94
CLN3-219ENST00000565778 SPEGQ15772 3267 aa20.94■□□□□ 0.94
CLN3-219ENST00000565778 KMT2BQ9UMN6 2715 aaPredicted RBP20.93■□□□□ 0.94
CLN3-219ENST00000565778 TRABD2BA6NFA1 517 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 CBFA2T2O43439 604 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 CSF2P04141 144 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 ALPPL2P10696 532 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 EIF4A3P38919 411 aaKnown RBP20.93■□□□□ 0.94
CLN3-219ENST00000565778 RGRP47804 291 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 SCNN1BP51168 640 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 THOP1P52888 689 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 PFN3P60673 137 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 DAB2P98082 770 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 BCL2L1Q07817 233 aa20.93■□□□□ 0.94
CLN3-219ENST00000565778 NSUN2Q08J23 767 aaKnown RBP eCLIP20.93■□□□□ 0.94
CLN3-219ENST00000565778 PTK2BQ14289 1009 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms