RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 UNQ6494/PRO21346Q6UXR6 183 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 SRLQ86TD4 932 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 TTC7BQ86TV6 843 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 VSIG1Q86XK7 387 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 OXR1Q8N573 874 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 CALR3Q96L12 384 aaKnown RBP13.56□□□□□ -0.24
CLK3-216ENST00000564468 ATP13A3Q9H7F0 1226 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 GDF3Q9NR23 364 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 TM7SF3Q9NS93 570 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 ETNK2Q9NVF9 386 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 IMPACTQ9P2X3 320 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 RALYQ9UKM9 306 aaKnown RBP13.56□□□□□ -0.24
CLK3-216ENST00000564468 ZMIZ1Q9ULJ6 1067 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 PCDHGB2Q9Y5G2 931 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 SNX11Q9Y5W9 270 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 SLCO1B1Q9Y6L6 691 aa13.56□□□□□ -0.24
CLK3-216ENST00000564468 FASNP49327 2511 aaKnown RBP13.55□□□□□ -0.24
CLK3-216ENST00000564468 ZFYVE26Q68DK2 2539 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 A0A1W2PR77 199 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 ZNF487B1APH4 448 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 TLR4O00206 839 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 RNF103O00237 685 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 SLC31A1O15431 190 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 IL4RP24394 825 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 SERPINA4P29622 427 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 CCT8P50990 548 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 HADHBP55084 474 aaKnown RBP13.55□□□□□ -0.24
CLK3-216ENST00000564468 TAS2R40P59535 323 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 BNC1Q01954 994 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 ELP6Q0PNE2 266 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 MMRN1Q13201 1228 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 SGCGQ13326 291 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 PAFAH1B3Q15102 231 aaKnown RBP13.55□□□□□ -0.24
CLK3-216ENST00000564468 ZNF423Q2M1K9 1284 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 ZNF284Q2VY69 593 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 ATP13A4Q4VNC1 1196 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 ANKRD20A8PQ5CZ79 823 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 LRRC38Q5VT99 294 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 TIGD7Q6NT04 549 aaPredicted RBP13.55□□□□□ -0.24
CLK3-216ENST00000564468 BRAT1Q6PJG6 821 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 PIP4P1Q86T03 277 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 PAF1Q8N7H5 531 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 KDF1Q8NAX2 398 aaPredicted RBP13.55□□□□□ -0.24
CLK3-216ENST00000564468 TSEN2Q8NCE0 465 aaKnown RBP13.55□□□□□ -0.24
CLK3-216ENST00000564468 OR2I1PQ8NGU4 316 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 ASB12Q8WXK4 309 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 KLHDC7BQ96G42 594 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 EXOC2Q96KP1 924 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 PSKH2Q96QS6 385 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 SLC17A9Q9BYT1 436 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 SUV39H2Q9H5I1 410 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 DDX56Q9NY93 547 aaKnown RBP13.55□□□□□ -0.24
CLK3-216ENST00000564468 PCDHB9Q9Y5E1 797 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 PCDHA13Q9Y5I0 950 aa13.55□□□□□ -0.24
CLK3-216ENST00000564468 EPN1Q9Y6I3 576 aaPredicted RBP13.55□□□□□ -0.24
CLK3-216ENST00000564468 A0A0A6YYK5 440 aaPredicted RBP13.54□□□□□ -0.24
CLK3-216ENST00000564468 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.54□□□□□ -0.24
CLK3-216ENST00000564468 A0A1W2PQ67 120 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 FLRT2O43155 660 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 SPOPO43791 374 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 MAFKO60675 156 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 CD48P09326 243 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 CD59P13987 128 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 MX2P20592 715 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 FECHP22830 423 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 KDELR1P24390 212 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 CDC25BP30305 580 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 ARRB1P49407 418 aaPredicted RBP13.54□□□□□ -0.24
CLK3-216ENST00000564468 AP1S1P61966 158 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 POLR2LP62875 67 aaKnown RBP13.54□□□□□ -0.24
CLK3-216ENST00000564468 BCL2L1Q07817 233 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 INAVAQ3KP66 663 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 TMEM259Q4ZIN3 620 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 RALGPS1Q5JS13 557 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 MARC1Q5VT66 337 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 ARHGAP36Q6ZRI8 547 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 DCP2Q8IU60 420 aaKnown RBP13.54□□□□□ -0.24
CLK3-216ENST00000564468 RHOT1Q8IXI2 618 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 NETO2Q8NC67 525 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 DEFB124Q8NES8 71 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 PCDH19Q8TAB3 1148 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.54□□□□□ -0.24
CLK3-216ENST00000564468 FAF2Q96CS3 445 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 ZNF830Q96NB3 372 aaPredicted RBP13.54□□□□□ -0.24
CLK3-216ENST00000564468 ELF4Q99607 663 aaPredicted RBP13.54□□□□□ -0.24
CLK3-216ENST00000564468 C1QTNF7Q9BXJ2 289 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 MAK16Q9BXY0 300 aaKnown RBP13.54□□□□□ -0.24
CLK3-216ENST00000564468 ERVMER34-1Q9H9K5 563 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 ZFR2Q9UPR6 939 aaKnown RBP13.54□□□□□ -0.24
CLK3-216ENST00000564468 HS3ST3A1Q9Y663 406 aa13.54□□□□□ -0.24
CLK3-216ENST00000564468 TSPAN11A1L157 253 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 LRRD1A4D1F6 860 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 AREL1O15033 823 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 INSIG1O15503 277 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 PCDHGA12O60330 932 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 NDUFA10O95299 355 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 WNT1P04628 370 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 ZFXP17010 805 aaPredicted RBP13.53□□□□□ -0.24
CLK3-216ENST00000564468 NFKBIAP25963 317 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 ABL2P42684 1182 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms