RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 GGA2Q9UJY4 613 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 PSAT1Q9Y617 370 aa21.48■■□□□ 1.03
CLN3-209ENST00000561689 IQANK1A0A1B0GTG1 560 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 GOLGA8TH3BQL2 631 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 EPOP01588 193 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 PRKCGP05129 697 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 CES1P23141 567 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 STK19P49842 368 aaPredicted RBP21.47■■□□□ 1.03
CLN3-209ENST00000561689 NSUN2Q08J23 767 aaKnown RBP eCLIP21.47■■□□□ 1.03
CLN3-209ENST00000561689 HSP90AA5PQ58FG0 334 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 BPIFB1Q8TDL5 484 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 TRIB3Q96RU7 358 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 GDE1Q9NZC3 331 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 ZNF180Q9UJW8 692 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 RAI2Q9Y5P3 530 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 PRRC2BQ5JSZ5 2229 aaKnown RBP21.47■■□□□ 1.03
CLN3-209ENST00000561689 TMEM120BA0PK00 339 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 PABPC1P11940 636 aaKnown RBP21.47■■□□□ 1.03
CLN3-209ENST00000561689 HLA-DPA1P20036 260 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 BMPR2Q13873 1038 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 MARK2Q7KZI7 788 aaKnown RBP21.47■■□□□ 1.03
CLN3-209ENST00000561689 KCNMB4Q86W47 210 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 OR6K2Q8NGY2 324 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 AGAP2Q99490 1192 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 TDRD1Q9BXT4 1180 aaKnown RBP21.47■■□□□ 1.03
CLN3-209ENST00000561689 CNOT10Q9H9A5 744 aaKnown RBP21.47■■□□□ 1.03
CLN3-209ENST00000561689 MARK1Q9P0L2 795 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 ACTL7BQ9Y614 415 aa21.47■■□□□ 1.03
CLN3-209ENST00000561689 C2orf16Q68DN1 1984 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 HEPACAM2A8MVW5 462 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 SPAG7O75391 227 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 NDST3O95803 873 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 CYP17A1P05093 508 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 PDHA1P08559 390 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 F7P08709 466 aaPredicted RBP21.46■■□□□ 1.03
CLN3-209ENST00000561689 PIRTP0C851 137 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 CHN1P15882 459 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 KRT4P19013 534 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 MDH1P40925 334 aaKnown RBP21.46■■□□□ 1.03
CLN3-209ENST00000561689 GNGT1P63211 74 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 ADAM15Q13444 863 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 FRG1Q14331 258 aaKnown RBP21.46■■□□□ 1.03
CLN3-209ENST00000561689 CNGA3Q16281 694 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 EML3Q32P44 896 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 NCEH1Q6PIU2 408 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 EP400NLQ6ZTU2 488 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 PTCD2Q8WV60 388 aaKnown RBP21.46■■□□□ 1.03
CLN3-209ENST00000561689 KLF6Q99612 283 aaPredicted RBP21.46■■□□□ 1.03
CLN3-209ENST00000561689 TNKS2Q9H2K2 1166 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 CLEC1BQ9P126 229 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 PRKAG3Q9UGI9 489 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 MYOFQ9NZM1 2061 aa21.46■■□□□ 1.03
CLN3-209ENST00000561689 HEATR9A2RTY3 570 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 GOLGA8RI6L899 631 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 PRLP01236 227 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 FGF1P05230 155 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 ARSAP15289 507 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 DLX2Q07687 328 aaPredicted RBP21.45■■□□□ 1.02
CLN3-209ENST00000561689 MPP2Q14168 576 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 SLC14A2Q15849 920 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 BLOC1S5Q8TDH9 187 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 PDCD6IPQ8WUM4 868 aaKnown RBP21.45■■□□□ 1.02
CLN3-209ENST00000561689 MYLIPQ8WY64 445 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 SMC6Q96SB8 1091 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 MRM3Q9HC36 420 aaKnown RBP21.45■■□□□ 1.02
CLN3-209ENST00000561689 TRIM49D1C9J1S8 452 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 KRT37O76014 449 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 VAPBO95292 243 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 MT-ND3P03897 115 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 TRAF2Q12933 501 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 DGKKQ5KSL6 1271 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 MROH9Q5TGP6 573 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 PACS1Q6VY07 963 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 MICALCLQ6ZW33 695 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 SRLQ86TD4 932 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 ADIPOR2Q86V24 386 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 ANKRD42Q8N9B4 389 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 RMDN1Q96DB5 314 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 SERAC1Q96JX3 654 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 EBF3Q9H4W6 596 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 IARS2Q9NSE4 1012 aaKnown RBP21.45■■□□□ 1.02
CLN3-209ENST00000561689 TREX1Q9NSU2 369 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 SENP1Q9P0U3 644 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 CDH7Q9ULB5 785 aa21.45■■□□□ 1.02
CLN3-209ENST00000561689 HMX2A2RU54 273 aa21.44■■□□□ 1.02
CLN3-209ENST00000561689 ZNF821O75541 412 aaPredicted RBP21.44■■□□□ 1.02
CLN3-209ENST00000561689 SNRPAP09012 282 aaKnown RBP21.44■■□□□ 1.02
CLN3-209ENST00000561689 ADH5P11766 374 aa21.44■■□□□ 1.02
CLN3-209ENST00000561689 SRCP12931 536 aa21.44■■□□□ 1.02
CLN3-209ENST00000561689 FCARP24071 287 aa21.44■■□□□ 1.02
CLN3-209ENST00000561689 SLC20A2Q08357 652 aa21.44■■□□□ 1.02
CLN3-209ENST00000561689 ATAT1Q5SQI0 421 aa21.44■■□□□ 1.02
CLN3-209ENST00000561689 TEDDM1Q5T9Z0 273 aa21.44■■□□□ 1.02
CLN3-209ENST00000561689 LGSNQ5TDP6 509 aa21.44■■□□□ 1.02
CLN3-209ENST00000561689 TANGO2Q6ICL3 276 aa21.44■■□□□ 1.02
CLN3-209ENST00000561689 ZNF449Q6P9G9 518 aa21.44■■□□□ 1.02
CLN3-209ENST00000561689 MGARPQ8TDB4 240 aa21.44■■□□□ 1.02
CLN3-209ENST00000561689 SMIM14Q96QK8 99 aa21.44■■□□□ 1.02
CLN3-209ENST00000561689 RANBP9Q96S59 729 aa21.44■■□□□ 1.02
CLN3-209ENST00000561689 ARIH1Q9Y4X5 557 aaPredicted RBP21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms