RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 RPL26L1Q9UNX3 145 aaKnown RBP9.34□□□□□ -0.91
LDLR-210ENST00000559340 MRFAP1Q9Y605 127 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 ACTL7AQ9Y615 435 aa9.34□□□□□ -0.91
LDLR-210ENST00000559340 EML5Q05BV3 1969 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 FAM187AA6NFU0 413 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 E7EVH7 732 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 AP3B1O00203 1094 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 KPNA3O00505 521 aaPredicted RBP9.33□□□□□ -0.92
LDLR-210ENST00000559340 FANCGO15287 622 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 SLC7A4O43246 635 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 LEFTY1O75610 366 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 EPOP01588 193 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 C7P10643 843 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 ITGB7P26010 798 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 KCNJ1P48048 391 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 PSMD8P48556 350 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 EPHB1P54762 984 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 MAXP61244 160 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 RPS14P62263 151 aaKnown RBP9.33□□□□□ -0.92
LDLR-210ENST00000559340 SARNPP82979 210 aaKnown RBP9.33□□□□□ -0.92
LDLR-210ENST00000559340 DSC2Q02487 901 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 CST6Q15828 149 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 USP39Q53GS9 565 aaKnown RBP9.33□□□□□ -0.92
LDLR-210ENST00000559340 ARMC12Q5T9G4 340 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 KIAA1211LQ6NV74 962 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 PKN3Q6P5Z2 889 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 FBXL19Q6PCT2 694 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 USP30Q70CQ3 517 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 B4GALNT4Q76KP1 1039 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 PCGF5Q86SE9 256 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 C11orf74Q86VG3 221 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 KLHL7Q8IXQ5 586 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 ABCA7Q8IZY2 2146 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 PGBD5Q8N414 524 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 CNTD1Q8N815 330 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 TMEM105Q8N8V8 129 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 CHST14Q8NCH0 376 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 CCDC110Q8TBZ0 833 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 LRRN4Q8WUT4 740 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 HMGB4Q8WW32 186 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 SLCO2A1Q92959 643 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 IFT43Q96FT9 208 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 IMP4Q96G21 291 aaKnown RBP9.33□□□□□ -0.92
LDLR-210ENST00000559340 EXOC2Q96KP1 924 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 OMDQ99983 421 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 ADGRE3Q9BY15 652 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 DDX47Q9H0S4 455 aaKnown RBP9.33□□□□□ -0.92
LDLR-210ENST00000559340 PABPC3Q9H361 631 aaKnown RBP9.33□□□□□ -0.92
LDLR-210ENST00000559340 MTG2Q9H4K7 406 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 C10orf88Q9H8K7 445 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 NOD2Q9HC29 1040 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 PCDH9Q9HC56 1237 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 SMARCAL1Q9NZC9 954 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 PHTF1Q9UMS5 762 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 WASF2Q9Y6W5 498 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 KMT2EQ8IZD2 1858 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 DOCK9Q9BZ29 2069 aa9.33□□□□□ -0.92
LDLR-210ENST00000559340 RALGAPA1Q6GYQ0 2036 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 FANCMQ8IYD8 2048 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 PI4KAP42356 2102 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 PDE2AO00408 941 aaPredicted RBP9.32□□□□□ -0.92
LDLR-210ENST00000559340 AXIN1O15169 862 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 UGT2B4P06133 528 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 CYP2A6P11509 494 aaPredicted RBP9.32□□□□□ -0.92
LDLR-210ENST00000559340 GABRG2P18507 467 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 NFKB1P19838 968 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 CD86P42081 329 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 NEK3P51956 506 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 COPAP53621 1224 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 CDK16Q00536 496 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 DR1Q01658 176 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 NIPAL4Q0D2K0 466 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 ELP6Q0PNE2 266 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 ZNF528Q3MIS6 628 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 NAPEPLDQ6IQ20 393 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 ANO7Q6IWH7 933 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 ERAP2Q6P179 960 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 SLC36A4Q6YBV0 504 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 ERN2Q76MJ5 926 aaKnown RBP9.32□□□□□ -0.92
LDLR-210ENST00000559340 LINC00523Q86TU6 105 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 RASSF3Q86WH2 238 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 HDDC3Q8N4P3 179 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 BBOF1Q8ND07 529 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 ARRDC2Q8TBH0 407 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 GRIN3AQ8TCU5 1115 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 FEM1CQ96JP0 617 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 SPACA7Q96KW9 195 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 MRGPRX1Q96LB2 322 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 KLHL32Q96NJ5 620 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 HHIPQ96QV1 700 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 RBM15Q96T37 977 aaKnown RBP eCLIP9.32□□□□□ -0.921e-7■■■□□ 17.8
LDLR-210ENST00000559340 PHOX2BQ99453 314 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 KRT12Q99456 494 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 FSD1LQ9BXM9 530 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 HDAC8Q9BY41 377 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 CEP41Q9BYV8 373 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 KDM4CQ9H3R0 1056 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 SGK2Q9HBY8 427 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 ITM2CQ9NQX7 267 aa9.32□□□□□ -0.92
LDLR-210ENST00000559340 PRMT8Q9NR22 394 aaPredicted RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms