RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 TEKQ02763 1124 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 FPGSQ05932 587 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 GALNT1Q10472 559 aaPredicted RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 MTA1Q13330 715 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 IL10RAQ13651 578 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 PTK2BQ14289 1009 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 GPNMBQ14956 572 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 SKIDA1Q1XH10 827 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 USP41Q3LFD5 358 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 CFAP221Q4G0U5 840 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 TIGD5Q53EQ6 642 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 SPOUT1Q5T280 376 aaKnown RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 LRRC38Q5VT99 294 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 WSCD1Q658N2 575 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 ITPRIPL1Q6GPH6 555 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 TANGO2Q6ICL3 276 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 PLEKHA7Q6IQ23 1121 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 FAM171BQ6P995 826 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 NEK10Q6ZWH5 1172 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 MON1BQ7L1V2 547 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 SLFN11Q7Z7L1 901 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 TMEM110Q86TL2 294 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 ACOT1Q86TX2 421 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 SPATA2LQ8IUW3 424 aaPredicted RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 SCML4Q8N228 414 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 C17orf53Q8N3J3 647 aaPredicted RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 B3GALNT2Q8NCR0 500 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 TMEM52Q8NDY8 209 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 SPPL3Q8TCT6 385 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 BRIX1Q8TDN6 353 aaKnown RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 SLC35F5Q8WV83 523 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 KBTBD7Q8WVZ9 684 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 GAB3Q8WWW8 586 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 CPA5Q8WXQ8 436 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 GOLGA1Q92805 767 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 TRIM43Q96BQ3 446 aaPredicted RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 NMD3Q96D46 503 aaKnown RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 SMARCD1Q96GM5 515 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 HIST1H2AHQ96KK5 128 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 ZNF558Q96NG5 402 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 RUNDC3BQ96NL0 473 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 HIST1H2AJQ99878 128 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 SYT15Q9BQS2 421 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 FAM167BQ9BTA0 163 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 MED10Q9BTT4 135 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 NUP85Q9BW27 656 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 PITHD1Q9GZP4 211 aaPredicted RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 SDCBP2Q9H190 292 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 NRDE2Q9H7Z3 1164 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 L2HGDHQ9H9P8 463 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 LRRC4Q9HBW1 653 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.29□□□□□ -1.56
LDLR-209ENST00000558528 HOMER3Q9NSC5 361 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 TDP1Q9NUW8 608 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 NOP53Q9NZM5 478 aaKnown RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 IFT80Q9P2H3 777 aaPredicted RBP5.29□□□□□ -1.56
LDLR-209ENST00000558528 HSFX1Q9UBD0 423 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 SNX12Q9UMY4 172 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 INSL6Q9Y581 213 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 ALG6Q9Y672 507 aa5.29□□□□□ -1.56
LDLR-209ENST00000558528 ARID2Q68CP9 1835 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 GOLGA6L10A0A0M3HER8 536 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 CTAGE15A4D2H0 777 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 CLCA1A8K7I4 914 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 EFCAB8A8MWE9 144 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 ZNF189O75820 626 aaPredicted RBP5.28□□□□□ -1.56
LDLR-209ENST00000558528 SOAT2O75908 522 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 DDHD2O94830 711 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 PROSCO94903 275 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 PCDH8O95206 1070 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 C1RP00736 705 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 ANXA2P07355 339 aaKnown RBP5.28□□□□□ -1.56
LDLR-209ENST00000558528 GALTP07902 379 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 KRT7P08729 469 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 CTAGE8P0CG41 777 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 RAD52P43351 418 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 MAGEA11P43364 429 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 KIR2DL1P43626 348 aaPredicted RBP5.28□□□□□ -1.56
LDLR-209ENST00000558528 KIR2DL2P43627 348 aaPredicted RBP5.28□□□□□ -1.56
LDLR-209ENST00000558528 RPL34P49207 117 aaKnown RBP5.28□□□□□ -1.56
LDLR-209ENST00000558528 TUFMP49411 452 aaKnown RBP5.28□□□□□ -1.56
LDLR-209ENST00000558528 GALK1P51570 392 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 ITGA8P53708 1063 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 RWDD2BP57060 319 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 RPL10AP62906 217 aaKnown RBP5.28□□□□□ -1.56
LDLR-209ENST00000558528 ITIH3Q06033 890 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 TCF15Q12870 199 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 PTP4A2Q12974 167 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 PDCLQ13371 301 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 MAMLD1Q13495 774 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 BTG3Q14201 252 aaPredicted RBP5.28□□□□□ -1.56
LDLR-209ENST00000558528 SPARCL1Q14515 664 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 MESDQ14696 234 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 GOLGA7BQ2TAP0 167 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 SLC44A4Q53GD3 710 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 BOLA3Q53S33 107 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 CLLU1OSQ5K130 101 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 SEL1L2Q5TEA6 688 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 OR6B2Q6IFH4 312 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 VSTM1Q6UX27 236 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms