RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 DEPTORQ8TB45 409 aa6.41□□□□□ -1.38
RTF1-204ENST00000558117 SEPT8Q92599 483 aa6.41□□□□□ -1.38
RTF1-204ENST00000558117 ZNF566Q969W8 418 aa6.41□□□□□ -1.38
RTF1-204ENST00000558117 NLRC4Q9NPP4 1024 aa6.41□□□□□ -1.38
RTF1-204ENST00000558117 TRIM36Q9NQ86 728 aa6.41□□□□□ -1.38
RTF1-204ENST00000558117 PRMT8Q9NR22 394 aaPredicted RBP6.41□□□□□ -1.38
RTF1-204ENST00000558117 IGSF9Q9P2J2 1179 aa6.41□□□□□ -1.38
RTF1-204ENST00000558117 MGAT4CQ9UBM8 478 aa6.41□□□□□ -1.38
RTF1-204ENST00000558117 STEAP1Q9UHE8 339 aa6.41□□□□□ -1.38
RTF1-204ENST00000558117 PCSK5Q92824 1860 aa6.41□□□□□ -1.38
RTF1-204ENST00000558117 DOPEY2Q9Y3R5 2298 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 WIPF3A6NGB9 483 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 ASB14A6NK59 587 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 HMGB1P1B2RPK0 211 aaPredicted RBP6.4□□□□□ -1.38
RTF1-204ENST00000558117 GRM8O00222 908 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 SH3BP5O60239 455 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 CD19P15391 556 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 STARD6P59095 220 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 TUBA4AP68366 448 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 GSTO1P78417 241 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 OS9Q13438 667 aaPredicted RBP6.4□□□□□ -1.38
RTF1-204ENST00000558117 HDAC1Q13547 482 aaPredicted RBP6.4□□□□□ -1.38
RTF1-204ENST00000558117 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.4□□□□□ -1.38
RTF1-204ENST00000558117 BEND3Q5T5X7 828 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 ABLIM2Q6H8Q1 611 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 ZNF782Q6ZMW2 699 aaPredicted RBP6.4□□□□□ -1.38
RTF1-204ENST00000558117 SFTPA1Q8IWL2 248 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 SRRM1Q8IYB3 904 aaKnown RBP6.4□□□□□ -1.38
RTF1-204ENST00000558117 FSTL5Q8N475 847 aaPredicted RBP6.4□□□□□ -1.38
RTF1-204ENST00000558117 MBD3L2Q8NHZ7 208 aaPredicted RBP6.4□□□□□ -1.38
RTF1-204ENST00000558117 SUN3Q8TAQ9 357 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 DDB2Q92466 427 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 DPF1Q92782 380 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 C18orf8Q96DM3 657 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 SNX18Q96RF0 628 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 MMS19Q96T76 1030 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 VCPKMTQ9H867 229 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 ASIC5Q9NY37 505 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 RGL1Q9NZL6 768 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 PARP14Q460N5 1801 aa6.4□□□□□ -1.38
RTF1-204ENST00000558117 URB1O60287 2271 aaKnown RBP6.39□□□□□ -1.39
RTF1-204ENST00000558117 LRRK2Q5S007 2527 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 FLNCQ14315 2725 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 RSPH10B2B2RC85 870 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 ATP2A1O14983 1001 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 LDHAP00338 332 aaKnown RBP6.39□□□□□ -1.39
RTF1-204ENST00000558117 RSPH10BP0C881 870 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 PECAM1P16284 738 aaPredicted RBP6.39□□□□□ -1.39
RTF1-204ENST00000558117 MST1P26927 711 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 CERS1P27544 350 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 RENBPP51606 427 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 UBE3AQ05086 875 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 MTAPQ13126 283 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 SRSF7Q16629 238 aaKnown RBP eCLIP6.39□□□□□ -1.39
RTF1-204ENST00000558117 RABL6Q3YEC7 729 aaPredicted RBP6.39□□□□□ -1.39
RTF1-204ENST00000558117 ARHGAP15Q53QZ3 475 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 TMTC4Q5T4D3 741 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 GRHL2Q6ISB3 625 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 DCLRE1AQ6PJP8 1040 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 BCDIN3DQ7Z5W3 292 aaKnown RBP6.39□□□□□ -1.39
RTF1-204ENST00000558117 TSPYL6Q8N831 410 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 LSM14AQ8ND56 463 aaKnown RBP6.39□□□□□ -1.39
RTF1-204ENST00000558117 OR6J1Q8NGC5 347 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 KAT2BQ92831 832 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 CASP10Q92851 521 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 SEMA4CQ9C0C4 833 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.39□□□□□ -1.39
RTF1-204ENST00000558117 ZNF700Q9H0M5 742 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 AATFQ9NY61 560 aaKnown RBP eCLIP6.39□□□□□ -1.39
RTF1-204ENST00000558117 MTF2Q9Y483 593 aaPredicted RBP6.39□□□□□ -1.39
RTF1-204ENST00000558117 CEP83Q9Y592 693 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 IL16Q14005 1332 aa6.39□□□□□ -1.39
RTF1-204ENST00000558117 TCRBV5S1A1TA0A578 114 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 POC1B-GALNT4F8VUJ3 575 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 TMPRSS11DO60235 418 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 GCATO75600 419 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 USP1O94782 785 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 WDR47O94967 919 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 ZNF806P0C7X5 589 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 ABCG1P45844 678 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 COPB1P53618 953 aaKnown RBP6.38□□□□□ -1.39
RTF1-204ENST00000558117 FOXF2Q12947 444 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 GPS1Q13098 491 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 CLCA4Q14CN2 919 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 RARS2Q5T160 578 aaKnown RBP6.38□□□□□ -1.39
RTF1-204ENST00000558117 MRNIPQ6NTE8 343 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 USP17L6PQ6QN14 398 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 CHSY1Q86X52 802 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 GALNT4Q8N4A0 578 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 C12orf76Q8N812 135 aaPredicted RBP6.38□□□□□ -1.39
RTF1-204ENST00000558117 ANKRD44Q8N8A2 993 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 PRR11Q96HE9 360 aaPredicted RBP6.38□□□□□ -1.39
RTF1-204ENST00000558117 FYTTD1Q96QD9 318 aaKnown RBP6.38□□□□□ -1.39
RTF1-204ENST00000558117 MPHOSPH6Q99547 160 aaKnown RBP6.38□□□□□ -1.39
RTF1-204ENST00000558117 DDX23Q9BUQ8 820 aaKnown RBP6.38□□□□□ -1.39
RTF1-204ENST00000558117 HDAC6Q9UBN7 1215 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 FBXO40Q9UH90 709 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 CDC23Q9UJX2 597 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 PATJQ8NI35 1801 aa6.38□□□□□ -1.39
RTF1-204ENST00000558117 SDK1Q7Z5N4 2213 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms