RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 DSG4Q86SJ6 1040 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 FAM160A2Q8N612 972 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-227ENST00000557269 LRIG1Q96JA1 1093 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 SMIM14Q96QK8 99 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 FCRL5Q96RD9 977 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 NEUROG2Q9H2A3 272 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 SUV39H2Q9H5I1 410 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 ITM2CQ9NQX7 267 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 USP36Q9P275 1121 aaKnown RBP12.95□□□□□ -0.34
SHMT2-227ENST00000557269 RAI2Q9Y5P3 530 aa12.95□□□□□ -0.34
SHMT2-227ENST00000557269 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-227ENST00000557269 C16orf96A6NNT2 1141 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 C1QTNF3-AMACRE9PGA6 284 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 AXIN1O15169 862 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 HTRA2O43464 458 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-227ENST00000557269 GALR2O43603 387 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-227ENST00000557269 FZD6O60353 706 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 PMPCBO75439 489 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 ADH1BP00325 375 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 PRLP01236 227 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 DNTTP04053 509 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 PRKCGP05129 697 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 SP9P0CG40 484 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 TIMP2P16035 220 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 CES1P23141 567 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 ITGB7P26010 798 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 SERPINA4P29622 427 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 MAPK8P45983 427 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 FNTAP49354 379 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 RAD51Q06609 339 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 BCL2L1Q07817 233 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 OLIG2Q13516 323 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 ANGPT1Q15389 498 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 WHAMMP3Q1A5X7 153 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 MAP7D1Q3KQU3 841 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 SYCP2LQ5T4T6 812 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 PIP5KL1Q5T9C9 394 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 FAM46CQ5VWP2 391 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 KDELC1Q6UW63 502 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-227ENST00000557269 ARHGEF18Q6ZSZ5 1173 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 PARS2Q7L3T8 475 aaKnown RBP12.94□□□□□ -0.34
SHMT2-227ENST00000557269 GSTA5Q7RTV2 222 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 KDELC2Q7Z4H8 507 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 FAM124AQ86V42 546 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 HDDC3Q8N4P3 179 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 CCDC89Q8N998 374 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 NELL1Q92832 810 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 ECHDC3Q96DC8 303 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 ZNF641Q96N77 438 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-227ENST00000557269 KRT12Q99456 494 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 FERMT1Q9BQL6 677 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 OSBPL1AQ9BXW6 950 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 ATP13A3Q9H7F0 1226 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 FBXL12Q9NXK8 326 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 PCYOX1Q9UHG3 505 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 FBXO4Q9UKT5 387 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 CYP8B1Q9UNU6 501 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 CHKBQ9Y259 395 aa12.94□□□□□ -0.34
SHMT2-227ENST00000557269 TSPAN11A1L157 253 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 CCDC188H7C350 402 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 SPINT1O43278 529 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 RNASEH2AO75792 299 aaKnown RBP12.93□□□□□ -0.34
SHMT2-227ENST00000557269 PGLSO95336 258 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 KRT14P02533 472 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 SERPINF2P08697 491 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 P2RY2P41231 377 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 ABL2P42684 1182 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 TAS2R38P59533 333 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 SEMG2Q02383 582 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 ZBTB16Q05516 673 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 SRSF5Q13243 272 aaKnown RBP12.93□□□□□ -0.34
SHMT2-227ENST00000557269 SPARCL1Q14515 664 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 GRM3Q14832 879 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 PCSK7Q16549 785 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 PARP6Q2NL67 630 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 AGBL4Q5VU57 503 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 ITPRIPL1Q6GPH6 555 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 ERN2Q76MJ5 926 aaKnown RBP12.93□□□□□ -0.34
SHMT2-227ENST00000557269 KLHDC8BQ8IXV7 354 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 GANCQ8TET4 914 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 PDCD6IPQ8WUM4 868 aaKnown RBP12.93□□□□□ -0.34
SHMT2-227ENST00000557269 FAM131CQ96AQ9 280 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 MRGPRX2Q96LB1 330 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 TRIB3Q96RU7 358 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 OMDQ99983 421 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 TDRD1Q9BXT4 1180 aaKnown RBP12.93□□□□□ -0.34
SHMT2-227ENST00000557269 HDAC8Q9BY41 377 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 ETNK1Q9HBU6 452 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 DKK3Q9UBP4 350 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 MBD1Q9UIS9 605 aaPredicted RBP12.93□□□□□ -0.34
SHMT2-227ENST00000557269 PCDHB9Q9Y5E1 797 aa12.93□□□□□ -0.34
SHMT2-227ENST00000557269 IGHV1OR15-9A0A0B4J2B8 117 aa12.92□□□□□ -0.34
SHMT2-227ENST00000557269 A0A0U1RQS6 177 aa12.92□□□□□ -0.34
SHMT2-227ENST00000557269 SOCS5O75159 536 aa12.92□□□□□ -0.34
SHMT2-227ENST00000557269 ZNF189O75820 626 aaPredicted RBP12.92□□□□□ -0.34
SHMT2-227ENST00000557269 AGTP01019 485 aa12.92□□□□□ -0.34
SHMT2-227ENST00000557269 IGLV3-19P01714 112 aa12.92□□□□□ -0.34
SHMT2-227ENST00000557269 ACADMP11310 421 aa12.92□□□□□ -0.34
SHMT2-227ENST00000557269 ADRB3P13945 408 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms