RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 CDH24Q86UP0 819 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 PALM2Q8IXS6 379 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 MICU2Q8IYU8 434 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 TBC1D21Q8IYX1 336 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 GLIS1Q8NBF1 620 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 ST13P5Q8NFI4 369 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-226ENST00000556825 POMGNT1Q8WZA1 660 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 PROX1Q92786 737 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 ASB9Q96DX5 294 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 FBXL20Q96IG2 436 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 FBXO5Q9UKT4 447 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 PMF1-BGLAPU3KQ54 211 aa13.94□□□□□ -0.18
SHMT2-226ENST00000556825 UBE4BO95155 1302 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 LOC102724428A0A0B4J2F2 783 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 PLD2O14939 933 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 MUSKO15146 869 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 PLA2G6O60733 806 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 TRAPPC2P0DI81 140 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 TRAPPC2BP0DI82 140 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 FDX1P10109 184 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 C7P10643 843 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 RALAP11233 206 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 TCN1P20061 433 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-226ENST00000556825 ARCN1P48444 511 aaKnown RBP13.93□□□□□ -0.18
SHMT2-226ENST00000556825 SIK1P57059 783 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 BAMBIQ13145 260 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 ALCAMQ13740 583 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 POLD3Q15054 466 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-226ENST00000556825 IRAK1BP1Q5VVH5 260 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 FCRLBQ6BAA4 426 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 DPY19L3Q6ZPD9 716 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 DNAJC10Q8IXB1 793 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 THNSL1Q8IYQ7 743 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 CBR4Q8N4T8 237 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 CYGBQ8WWM9 190 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 CDCA7Q9BWT1 371 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-226ENST00000556825 DSN1Q9H410 356 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 IARS2Q9NSE4 1012 aaKnown RBP13.93□□□□□ -0.18
SHMT2-226ENST00000556825 CNOT6Q9ULM6 557 aaKnown RBP13.93□□□□□ -0.18
SHMT2-226ENST00000556825 SNCAIPQ9Y6H5 919 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 SPATA31A1Q5TZJ5 1347 aa13.93□□□□□ -0.18
SHMT2-226ENST00000556825 CLRN2A0PK11 232 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 ZBBXA8MT70 800 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 ZNF195O14628 629 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 ARHGEF9O43307 516 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 LYPLA1O75608 230 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 TOM1L1O75674 476 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 AKAP3O75969 853 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 SNAP29O95721 258 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 STARD3NLO95772 234 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 TP53P04637 393 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 JUNP05412 331 aaKnown RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 CLEC2LP0C7M8 214 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 HTR1BP28222 390 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 DPP6P42658 865 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 SLC1A6P48664 564 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 NFIAQ12857 509 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 RIN1Q13671 783 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 PLEKHG6Q3KR16 790 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 TMEM119Q4V9L6 283 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 RBM20Q5T481 1227 aaKnown RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 TTC39BQ5VTQ0 682 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 KCNK18Q7Z418 384 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 FAM124AQ86V42 546 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 BBS7Q8IWZ6 715 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 METTL4Q8N3J2 472 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 FBXO36Q8NEA4 188 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 OR7A2PQ8NGA2 310 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 RP9Q8TA86 221 aaKnown RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 ZFAND1Q8TCF1 268 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 NAP1L4Q99733 375 aaKnown RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 TRAF4Q9BUZ4 470 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 PPA2Q9H2U2 334 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 WDR41Q9HAD4 459 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 MRPL40Q9NQ50 206 aaKnown RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 GTF2IRD1Q9UHL9 959 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 TRMT6Q9UJA5 497 aaKnown RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 IPPQ9Y573 584 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 LINC00862A6NCI5 91 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 HMX3A6NHT5 357 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 A8MV72 311 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 C9IYK1 514 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 SLC16A3O15427 465 aaKnown RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 CLIC3O95833 236 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 HOXD4P09016 255 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 DDCP20711 480 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 PROZP22891 400 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 CAPGP40121 348 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 CYP4F2P78329 520 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 CYP4F3Q08477 520 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 PPIL2Q13356 520 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 RFTN1Q14699 578 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 ZMYND11Q15326 602 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 Q3ZCU0 254 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 C4orf46Q504U0 113 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 KIAA1324Q6UXG2 1013 aaKnown RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 ERMP1Q7Z2K6 904 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 OR4M2Q8NGB6 313 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 TRPM4Q8TD43 1214 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms