RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 PCDHB9Q9Y5E1 797 aa12.65□□□□□ -0.38
SHMT2-214ENST00000554604 A0A1W2PPC4 97 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 K7ERQ8 282 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 AGPSO00116 658 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 KPNA3O00505 521 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-214ENST00000554604 OPA1O60313 960 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 GJB3O75712 270 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 SYF2O95926 243 aaKnown RBP12.64□□□□□ -0.39
SHMT2-214ENST00000554604 CD59P13987 128 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 RHOQP17081 205 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 GLDCP23378 1020 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 PMLP29590 882 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 DRD3P35462 400 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 COILP38432 576 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-214ENST00000554604 CCR5P51681 352 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 ZNF143P52747 638 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-214ENST00000554604 C21orf59P57076 290 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 TAS2R40P59535 323 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 RPL7AP62424 266 aaKnown RBP12.64□□□□□ -0.39
SHMT2-214ENST00000554604 RACK1P63244 317 aaKnown RBP12.64□□□□□ -0.39
SHMT2-214ENST00000554604 SIM1P81133 766 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-214ENST00000554604 NRG1Q02297 640 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-214ENST00000554604 SLC20A2Q08357 652 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 CCDC15Q0P6D6 951 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 TERF2Q15554 542 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 HLA-BQ31612 363 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 GLIPR1L2Q4G1C9 344 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 EFHC2Q5JST6 749 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 CCDC137Q6PK04 289 aaKnown RBP12.64□□□□□ -0.39
SHMT2-214ENST00000554604 JAMLQ86YT9 394 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 CCDC185Q8N715 623 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 TSEN2Q8NCE0 465 aaKnown RBP12.64□□□□□ -0.39
SHMT2-214ENST00000554604 NTAN1Q96AB6 310 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 SKA1Q96BD8 255 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 LRRC45Q96CN5 670 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 TBC1D31Q96DN5 1066 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 SH3GL2Q99962 352 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 CNPY3Q9BT09 278 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 ACE2Q9BYF1 805 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-214ENST00000554604 FAM129AQ9BZQ8 928 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 RETREG1Q9H6L5 497 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 DYRK4Q9NR20 520 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 AASDHPPTQ9NRN7 309 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 HOMER3Q9NSC5 361 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 PPM1HQ9ULR3 514 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 TPX2Q9ULW0 747 aaKnown RBP12.64□□□□□ -0.39
SHMT2-214ENST00000554604 ANKRD6Q9Y2G4 727 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 SLCO1B1Q9Y6L6 691 aa12.64□□□□□ -0.39
SHMT2-214ENST00000554604 TDRD6O60522 2096 aaKnown RBP12.64□□□□□ -0.39
SHMT2-214ENST00000554604 GOLGA4Q13439 2230 aaKnown RBP12.64□□□□□ -0.39
SHMT2-214ENST00000554604 SPAARA0A1B0GVQ0 90 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 FAM72CH0Y354 149 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 PLK4O00444 970 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 POLR3GO15318 223 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-214ENST00000554604 SLC7A4O43246 635 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 DAPK3O43293 454 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 SMAD6O43541 496 aaKnown RBP12.63□□□□□ -0.39
SHMT2-214ENST00000554604 SH3BP5O60239 455 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 LRIG2O94898 1065 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 PRNPP04156 253 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 CETN2P41208 172 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 MAPKAPK2P49137 400 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 METAP1P53582 386 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 COPS2P61201 443 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 BNC1Q01954 994 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 CNTN1Q12860 1018 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 FOXC1Q12948 553 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 HNRNPDQ14103 355 aaKnown RBP12.63□□□□□ -0.39
SHMT2-214ENST00000554604 TRADDQ15628 312 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 KIF19Q2TAC6 998 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 FAM72AQ5TYM5 149 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 MANEALQ5VSG8 457 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 FAM72DQ6L9T8 149 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 TTC27Q6P3X3 843 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 C22orf39Q6P5X5 142 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 LAYNQ6UX15 382 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 SYDE1Q6ZW31 735 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-214ENST00000554604 FAM72BQ86X60 149 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 ZNF354CQ86Y25 554 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 NAXDQ8IW45 347 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 RCOR2Q8IZ40 523 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 IQCKQ8N0W5 287 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 OR2A12Q8NGT7 310 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 GRIN3AQ8TCU5 1115 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 SETD7Q8WTS6 366 aaKnown RBP12.63□□□□□ -0.39
SHMT2-214ENST00000554604 RBM41Q96IZ5 413 aaKnown RBP12.63□□□□□ -0.39
SHMT2-214ENST00000554604 CNTNAP3BQ96NU0 1288 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 TRIM51Q9BSJ1 452 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 CNTNAP3Q9BZ76 1288 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 TNKS2Q9H2K2 1166 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 KDM4CQ9H3R0 1056 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 IL21RQ9HBE5 538 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 TM7SF3Q9NS93 570 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 DDX56Q9NY93 547 aaKnown RBP12.63□□□□□ -0.39
SHMT2-214ENST00000554604 ZNF212Q9UDV6 495 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 FNDC3AQ9Y2H6 1198 aaKnown RBP12.63□□□□□ -0.39
SHMT2-214ENST00000554604 SNX11Q9Y5W9 270 aa12.63□□□□□ -0.39
SHMT2-214ENST00000554604 TCRBV7S2A1N4TA0A589 114 aa12.62□□□□□ -0.39
SHMT2-214ENST00000554604 GOLGA8KD6RF30 607 aa12.62□□□□□ -0.39
SHMT2-214ENST00000554604 CREB3O43889 395 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms